Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01082 ATGGAGCAAGCAGGTGAGTTCCTACTGTCAAAGATAGCACGAGGTGATGGACATGGTGAAAACTCGCCATACTTTGAAGGGTGGAAGGCTTATGAAGATGACCCCTTTCATCCCATCAAGAATCCCAATGGGGTTATCCAGATGGGTCTTGCTGAAAATCAGTTGAGTTGTGATTTGGTGCAAGAATGGATAACAAGTAATCCAGAGGCTTCCATTTGCAGTGTAGAAGGAGTGCATGAATTCAAGGATATTGCTAACTTTCAAGATTATCACGGTCTCCCACTCTTCCGACAAGGAGTGGCTAAATTGATGGGGAGAACGAGAGGGAATAGAGTGAAGTTCGATCCTGATCGTATTGTTATGAGCGGCGGAGCAACCGGAGCCCACGAGGTCACTGCCTTTTGTTTGGCTGACCCCGGTGATGCCTTCTTGGTACCCACTCCTTACTATCCAGGCTTCGATAGGGATTTGAGGTGGAGAACAGGAGTCCAACTTATTCCGGTGACATGTGAAAGCAAAAACAACTTCAAGTTGACAAAGAAAGCGTTAGAATCTGCATTAGAGAAAGCCAAAGAAGATAACATCACAGTCAAGGGCTTACTCATCACCAATCCATCAAACCCGCTTGGAACAATCATGGACAAAGAAACCTTGAAAATGGTTGTCACATTCATCAACCACAACCACATCCACCTAGTATCTGACGAAATATACGCCGCAACGGTTTTTAGCCACCCGGGTTTCACAAGCATAGCTGAGATAATAGAAGAAGAAGACATTAAAATGGAATGTGACCGTAACCTCGTTCACATTGTTTATAGTCTCTCAAAGGATATGGGCTTCCCTGGTTTCAGAGTTGGCATCATATACTCCTACAATGACAACGTCGTCAACTGTGCTCGCAAAATGTCAAGCTTTGGATTAGTGTCCACACAAACTCAGCATCTGATAGCAGCGATGCTATCAGATGATGAGTTTGTGCAACGCTTCCTTGCAGAGAGCGCAAGGAGGCTTGCGAAAAGGTATGGGATTTTCTGCCAAGGGCTTAGACAAGTTGGCATAAAATGCTTGCAGAGCAATGGTGGTTTGTTTCTATGGATGGATCTGCGTCCTCTTCTGAAGAAGCAAACGTTCGAAGAGGAGATGGCGCTTTGGAGAGTGATAATCCACAAAGTTAAGATAAATGTTTCGCCTGGTTGTTCCTTCCATTGTTGTGAGCCTGGTTGGTTCAGGGTGTGCTATGCAAACATGGATGATAGGGCTGTGCAAGTTTCATTGGCCAGAATGCGTGGCTTTGTGCTCCAGAACAAGGACGTGATGTTATCTTCAAAGAAACCTTGCAGCCCAAGAAACTTAATGCTGCCAAGAAACTTAATGCTGAGCTTCTCATCCATGAGGATGGATGATTTCTTGATGTCACCTCACTCTCCTATCCCTCAATCGCCTCTTGTCAAAGCTACAACTTGA 1467 0.4506 MEQAGEFLLSKIARGDGHGENSPYFEGWKAYEDDPFHPIKNPNGVIQMGLAENQLSCDLVQEWITSNPEASICSVEGVHEFKDIANFQDYHGLPLFRQGVAKLMGRTRGNRVKFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLIPVTCESKNNFKLTKKALESALEKAKEDNITVKGLLITNPSNPLGTIMDKETLKMVVTFINHNHIHLVSDEIYAATVFSHPGFTSIAEIIEEEDIKMECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDNVVNCARKMSSFGLVSTQTQHLIAAMLSDDEFVQRFLAESARRLAKRYGIFCQGLRQVGIKCLQSNGGLFLWMDLRPLLKKQTFEEEMALWRVIIHKVKINVSPGCSFHCCEPGWFRVCYANMDDRAVQVSLARMRGFVLQNKDVMLSSKKPCSPRNLMLPRNLMLSFSSMRMDDFLMSPHSPIPQSPLVKATT 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01082 488 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Adu05g01082 488 Gene3D - 68 323 IPR015421 GO:0003824
Adu05g01082 488 SUPERFAMILY PLP-dependent transferases 19 432 IPR015424 -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 48 74 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 81 97 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 118 138 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 140 161 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 194 218 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 230 253 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Adu05g01082 488 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Adu05g01082 488 Pfam Aminotransferase class I and II 46 424 IPR004839 GO:0009058|GO:0030170
Adu05g01082 488 Gene3D Aspartate Aminotransferase, domain 1 34 428 IPR015422 GO:0003824
Adu05g01082 488 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 6 445 - -
Adu05g01082 488 Coils Coil 173 193 - -
Adu05g01082 488 CDD AAT_like 86 420 - -
Adu05g01082 488 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01082 Adu-Chr5 14502304 14504243 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01082 K20772 - gmx:100793020 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01082 05 14502304 14504243 Adu05g01082 05 14502304 14504243 ECH
Adu05g01082 05 14502304 14504243 Adu03g02735 03 100950593 100952802 PCT