Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01005 ATGCAGAAGAGCGCTTCATCAGGGGTGTCATTGCTGGGCCCAGGAGGCTTAGACCTAACACACTCCTTCTTCACCTCCATACTCAACTCTGCACCGCCCTCTCCCACTAAGCGCCACAACAAGGTCACTGTAGTTGGCGCAGGAAACGTCGGAATGGCCGTAGCCCAAACCATCCTCACTCAGGACCTCGTCGACGAACTCGTCCTCGTCGATGCCCTCCCCGACAAGCTCCGCGGCGAGATGCTGGACCTGCAGCACGCCGCCGCGTTCCTTCCACGCACCAAGATCCACGCGTCCACGGAGTACTCCGTCACGGCTGGGTCTGACCTGTGCATCGTGACGGCAGGGGCACGGCAGGTGAGCGGAGAGTCAAGGCTGAACCTGGTGCAGAGGAACGTGTCCCTGTTCAGAAGCATCATTCCCCCTCTGGTTCAGCACTCGCCGGCATGTGTTATTCTTGTGGTTTCGAATCCGGTGGACGTGCTAACATATGTGGCCTGGAAGCTGTCAGGGTTTCCGGCGAACCGCGTCATCGGCTCCGGCACCAACCTGGACTCTTCCCGTTTCCGTTTCCTGATTGCCGATCATCTTGACGTCAACGCTCACGACGTTCAGGCATACATTGTAGGGGAACACGGCGACAGCTCGGTGGCCCTGTGGTCAAGCATCAGCGTGGGCGGAGTTCCGGTGCTAAGCTTTCTTGAGAAGCAAGAGATAGCGTACGAGAGAGTGACGCTGGAGAAGATACACAAGGCAGTGATAGAGAGCGCCGATGAAGTGATCCGTCTGAAAGGGTACACATCGTGGGCCATAGGGTACTCTGTGGCTAACTTGGCTCGAAGCATTCTGAGGGACCAGAGGAAGGTGCACCCCGTTTCGGTTCTTGCAAAGGGGTTTCATGGTATCCATGGAGGGAAAGTGTTTCTGAGCTTGCCGTCGCAGCTTGGTAGGGGAGGGGTCATTGGTGTTACCAACATCCATTTGACTCCCAAAGAGGCACAACACCTCAGAGACTCTGCCACCGCCATCCTTGAGGTCCAAAATCAACTTCCAATTTGA 1059 0.5666 MQKSASSGVSLLGPGGLDLTHSFFTSILNSAPPSPTKRHNKVTVVGAGNVGMAVAQTILTQDLVDELVLVDALPDKLRGEMLDLQHAAAFLPRTKIHASTEYSVTAGSDLCIVTAGARQVSGESRLNLVQRNVSLFRSIIPPLVQHSPACVILVVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAHDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYERVTLEKIHKAVIESADEVIRLKGYTSWAIGYSVANLARSILRDQRKVHPVSVLAKGFHGIHGGKVFLSLPSQLGRGGVIGVTNIHLTPKEAQHLRDSATAILEVQNQLPI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01005 352 CDD LDH_1 37 349 - -
Adu05g01005 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 179 IPR036291 -
Adu05g01005 352 SUPERFAMILY LDH C-terminal domain-like 180 350 IPR015955 GO:0003824|GO:0016616
Adu05g01005 352 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 44 343 IPR011304 GO:0004459|GO:0005737
Adu05g01005 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 179 IPR001236 GO:0016491
Adu05g01005 352 PIRSF Lac_mal_DH 36 351 IPR001557 GO:0016616|GO:0019752
Adu05g01005 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 343 IPR022383 GO:0016616
Adu05g01005 352 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Adu05g01005 352 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Adu05g01005 352 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Adu05g01005 352 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Adu05g01005 352 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Adu05g01005 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 352 - -
Adu05g01005 352 PANTHER L-LACTATE DEHYDROGENASE 1 352 - -
Adu05g01005 352 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Adu05g01005 352 Gene3D - 22 181 - -
Adu05g01005 352 Gene3D - 182 350 IPR015955 GO:0003824|GO:0016616
Adu05g01005 352 Hamap L-lactate dehydrogenase [ldh]. 39 351 IPR011304 GO:0004459|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01005 Adu-Chr5 13347938 13348996 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01005 K00016 - qsu:111988136 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01005 05 13347938 13348996 Adu05g01005 05 13347938 13348996 ECH
Adu05g01005 05 13347938 13348996 Adu01g01450 01 37582152 37584371 PCT