Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00943 ATGGAAAAACAAAACAAAAACAGAATCACAGCAGAGGAGCTACCGGCGCTTCTCTTCTTCACTAACACGCCGAAACGCGTTTCGTCCTCTAATCCCTTTTTCTTCCGCGCGATTCTCGCACCCAACGGTTTCAACGCACTTCTCAGTTCTCACTCTCACACTCTCGCCTTCCCTATATTCGCATTCATTCACGTTTTTCTACCGCTGCTTGAGATTTTCTGCTTTGCACAAGGAATAAAGTTTGGCCTTTTAACTGAGGAAGATATAGAGAATGCCTCTACTTTGGAAATACAAGCAGCCGGGCAGGTTAACTGTTCTGATTTGGGACTTCCAAACCCAACTCATGAGTGCACCACTTGTGGTTCTAAAGATAGAAATTTCTGTGAAGGCCATTATGGGGTAATTAAATTTAACATTACCATACCCCATCCTTATTTCCTATCGGAGATTGCACAACTTTTGAACAAAATCTGCCCTGCTTGTAAATCTATTCGAGAAGAATTACGGAGCAAGGGTGCTCAATTACTCTTTGGAACCAAACGGTCTAATGGTTGTAAATATTGTTCTGGAAATAGTTATCCAAAAATGAAATTCAGAGTTTCGTCCAATGATCTCTTCCGAAGAACTGCGATTATTGTTGAAATAAATGAGAGGTCTTTAAACTCAAAGAAACATTTGGGACGAAGAGTACCTGAACATTTTTGGGATTTCATCCCCTCAGATCCTCAGCAAGAAGAAAGTTGCATAAAACCAAACAGAAGGGCTTTATCCCCTTATCAGGTTCTTTGTTTGCTGAGCGATGTTGATCAAGACTTTGTTCAAAAATTTGTTCCACAAACGGAGTTACTTGGTCTTAATTGCTTCCCGGTGACGCCAAACTGTCATCGCGTGACAGAAGTCATGCATGCATTTTCTAATGCAAATCGATTGAGTTTTGACAACAGGACCAGAGCTTGTAAGAAATTGGTTGATTTCCGGGGTACCGCTACTGAGTTAATTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGGCAAAATTTTCAACCTTTACTTTTCTACATCCTGATAAAACACCAGCAAACAGTTTTGCTGATATCCAGCAAAAGAAAAATGCTGAAAATGCGTGCAATTCATCTGGTTTGAGATGGATGAAAGATGTGGTTCTTGGAAAACGTAATGATAGTTCATTCCGTACGGTAGTAGTTGGTGATCCAGACCTTGAGCCTGGTGAAATTGGTATACCTTGTCAAATCGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAACAAGCATAATTTGGAAAAATTGCTTTATTGTGGCGAATTACGCATGATAGAGAAGGGAAACATAAAGGTCCGCAGAAAAGGTAGTCCTATTGTCCTGTACAAAAAAGAAGACCTTCAAATAGGAGACTTGTTTTATCGGCCACTTGGTGATGGTGATAAAGTATTGATAAATAGGCCACCTTCCATACATCAACACTCAATGATTGCTCTCTCGGTTAAAGTCCTACCAATATCTTCCGCGGTGTCTATCAACCCACTTTGTTGTTCCCCACTCCGTGGGGATTTTGACGGTGATTGTCTTCATGGGTATATTCCAGATTCAGTTGCTGCAAGAGTTGAGCTAAGTGAGCTAGTTTCTTTGGAGAAGCAATTGATAAATGGGCAGAGTGGTAAAAATCTGCTTTCACTCTCTCAGGATAGCTTGACGGCTGCCCATTTGCTGATGGAAGATGGGGTCCTTTTGAATGTTTACCAAATGCAGCAGCTTCAGATGTTTTGCGCTCATAATTTAACGCCACCTGCTATTGTTAAAGCTCCTTCAAGTAATACCTCATTTTGGACTGGCAAGCAATTATTCAGCATGCTGTTGCCTTCTAATCTTGACTATTCTTTTCCTTCAAATGGTGTTTCTGTCAGAAATGGCGAGCTTTTATCTTCTTCAGAGGCTTCTGGTTGGTTACGTGATTCTGACTGTAATCTCTTCCAGAGTCTTGTTGAACAATGTCAAGGGGACACTCTAGACTTTTTGTATGCTGCACAGAAAGTTCTTTGTGAGTGGTTATCTATGACAGGTTTCACAGTTTCACTTGCTGACCTGTACCTTGCTTCTGACTCCTATGCACGGAAAAATATGATGGAGGAAATCTCCTTTGGCTTGCAAGAAGCAGAACATTCGTGTAACTTCAAACAGTTGTTAGTAGATTCCTGTTGTGATTTTCTGGCAGGTAATGTTAAAGGAAATGAAAAGACTATGATTGATGTGGTTCGTATGAACTATGAAAGGCAAATATCAGCTGCTCTCAGTCAAGAGTCAGTTGATGCTTTCAGACAAGTTTTTCGTAATATTCAAGGTCTAGCTGACAGATATGGAGAGAAGGACAATTCATTCCTTGCTATGATCAAGGCTGGAAGCAAGGGTAATTTGCTGAAACTAGTGCAACATTCCATGTGCCTTGGCCTACAACATTCTTTGGTACGTTTATCATTCAGAATTCCCCATCAACTCTCATGTGCTGCTTGGAATAGTGAAAAGGGGATTGATTCTGTTCAAAAGTTTTCTAGTACTCCTAAATCTGTTCAGTCTTATATCCCATATGCTGTGGTTGAAGGATCGTTCCTGTCTGGGTTGAATCCACTTGAATGTTTTGTTCATTCGGTCACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGAACATTATCTCGTAGACTAATGTTCTTCATGCGGGATATCTGTGGTGCATATGATGGAACGGTTAGGAATTTGTATGGTAATCAGATTGTACAGTTTTATTATGATACTGATGAGGATTCGCCTATGGGTAGCTGCTCCCAAGAGACTACTATAGGTGGTGAACCAGTTGGAGCACTTGCTGCTTGTGCGATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAATAAGTCTTCTTGAAACATCACCTCTGTTGAATTTAAAGAGTGTTCTGGAGTGTGGTTCCAAGAAAAAAAGTGGTGACCAGACTGTCTCTTTATTTTTGTCTGCGAAATTTCGTGACCGGAGATATGGGTTTGAGTATGCAGCATTTGATGTTAAGAATTATTTGGAAAGAATAATGTTCTCAGATATTGTTTCTACTGTCATGATAATTTTCACTTCACAGTCTAGAAACCAAGAAAAGTACAGCCCTTGGGTTTGCCATTTTCATCTAGACAAGGAAATTGTTCGCAGAAGAAACCTGAAATTGTGTTCTATCATTAACTCTCTTAAGAAGAGATGTGGGATTCTAAGGAAAGAATCCAAAGTATGTTTTGCCAGCATGGAAATATCACTCAAGAAGTGTTCAGCTGCATACATGTCTCAGGAAGGAAAAATTACTTCTACAGATAAGGGAATGGAGGGTGATGATTGCATCACTGTCACCCTTGTTGAATACTTAAACAATTCCATACCACTTGATGATGTTCGGGACTTTATGCTACCTTCCCTTCTTGGAACTACTGTAAAAGGATTTCCGGAGATCACGAAGGTTGATATTCTGTGGAATAGTCTTCCGAAATCAGCAAATTTCAGAAGTGGCTGTTCCGGGGAACTTTACTTGAGGATTACTATGTCAAGTGATAATAGCAGTGGAAGATTCTGGGGTGTTCTTATAAATCATTGTCTACCGATAATGCATATGATTGATTGGACAAGAAGTCTCCCAGATAACATAAATCATTTCTGCTCAGCCTATGGAATTGATGCAGGGTGGAAATATTTTCTCCAGAATTTGGCATCTGCAACAACAGATACTGGCAAGACAGTCCTTCACAAGCATTTGCGTCTTGTTGCTGATAGCTTGTCAGTTAGTGGAGAGTTTGTAGGGTTAAATGGAAAGGGCATGGCACGACAGAGACAACATGCATCTGTTTCATCTCCCTTTGTACAAGCATGCTTTTCTAACCCTGGTAGTTGCTTTATAAAATCTGCTAAGGCTGGAGTCAAAGATGATCTGCAAGGCATCCTCGACGCATTGGCATGGGGAAACTGTCCACCCTTAGGGACAAGCGGACAATTTGAGATTATATATTCTCCGAAGGGACAAGAGCTTGCTAAATCTGGAGATGTTTATAAACTGCTAAAGGCCAACTTTGACCAGCAGATTGAAAAGAGCAGTCTCCCTACTGCTTACAAATATTCAGCTGAGAAATGGAGTTCTAATGTTCGGCCCAAAAATGGTGGGTTTGGCTTGAAAGTGCACAAACAGTTGAAAAGCCTTATTAGAAATTTTGTGACTGTGAACGATATTTACAAACTGACTTCTGCATCAAGGAACATACTGAACAAGTATTCAATTGATGAACAACTAAATGAGAAGGACCTATTTACCATGCTGAAGGTTCTGCATTTTCATCCGCATAGAGATGAAAAGTATGGCTCTGGACCACAGCACATCAAGGTTGGATGGCACCCTGAACATAAGACTACACGCTGCTTTTTCATAGAACGAACTGATGGGACTGTGGAGGATTTTTCATACCGGAAATGCATTCTTGGTGCTCTTGAGATTGTTGCCCCAGATAAGGCAAAGACCCAGAAGAAAAAATGGAAGAAAGATGAATAA 4599 0.4064 MEKQNKNRITAEELPALLFFTNTPKRVSSSNPFFFRAILAPNGFNALLSSHSHTLAFPIFAFIHVFLPLLEIFCFAQGIKFGLLTEEDIENASTLEIQAAGQVNCSDLGLPNPTHECTTCGSKDRNFCEGHYGVIKFNITIPHPYFLSEIAQLLNKICPACKSIREELRSKGAQLLFGTKRSNGCKYCSGNSYPKMKFRVSSNDLFRRTAIIVEINERSLNSKKHLGRRVPEHFWDFIPSDPQQEESCIKPNRRALSPYQVLCLLSDVDQDFVQKFVPQTELLGLNCFPVTPNCHRVTEVMHAFSNANRLSFDNRTRACKKLVDFRGTATELISRVLDCLRISKAKFSTFTFLHPDKTPANSFADIQQKKNAENACNSSGLRWMKDVVLGKRNDSSFRTVVVGDPDLEPGEIGIPCQIAESLQVSEYVNKHNLEKLLYCGELRMIEKGNIKVRRKGSPIVLYKKEDLQIGDLFYRPLGDGDKVLINRPPSIHQHSMIALSVKVLPISSAVSINPLCCSPLRGDFDGDCLHGYIPDSVAARVELSELVSLEKQLINGQSGKNLLSLSQDSLTAAHLLMEDGVLLNVYQMQQLQMFCAHNLTPPAIVKAPSSNTSFWTGKQLFSMLLPSNLDYSFPSNGVSVRNGELLSSSEASGWLRDSDCNLFQSLVEQCQGDTLDFLYAAQKVLCEWLSMTGFTVSLADLYLASDSYARKNMMEEISFGLQEAEHSCNFKQLLVDSCCDFLAGNVKGNEKTMIDVVRMNYERQISAALSQESVDAFRQVFRNIQGLADRYGEKDNSFLAMIKAGSKGNLLKLVQHSMCLGLQHSLVRLSFRIPHQLSCAAWNSEKGIDSVQKFSSTPKSVQSYIPYAVVEGSFLSGLNPLECFVHSVTNRDSSFSDNADLPGTLSRRLMFFMRDICGAYDGTVRNLYGNQIVQFYYDTDEDSPMGSCSQETTIGGEPVGALAACAISEAAYSALGQPISLLETSPLLNLKSVLECGSKKKSGDQTVSLFLSAKFRDRRYGFEYAAFDVKNYLERIMFSDIVSTVMIIFTSQSRNQEKYSPWVCHFHLDKEIVRRRNLKLCSIINSLKKRCGILRKESKVCFASMEISLKKCSAAYMSQEGKITSTDKGMEGDDCITVTLVEYLNNSIPLDDVRDFMLPSLLGTTVKGFPEITKVDILWNSLPKSANFRSGCSGELYLRITMSSDNSSGRFWGVLINHCLPIMHMIDWTRSLPDNINHFCSAYGIDAGWKYFLQNLASATTDTGKTVLHKHLRLVADSLSVSGEFVGLNGKGMARQRQHASVSSPFVQACFSNPGSCFIKSAKAGVKDDLQGILDALAWGNCPPLGTSGQFEIIYSPKGQELAKSGDVYKLLKANFDQQIEKSSLPTAYKYSAEKWSSNVRPKNGGFGLKVHKQLKSLIRNFVTVNDIYKLTSASRNILNKYSIDEQLNEKDLFTMLKVLHFHPHRDEKYGSGPQHIKVGWHPEHKTTRCFFIERTDGTVEDFSYRKCILGALEIVAPDKAKTQKKKWKKDE 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00943 1532 CDD RNAP_IV_RPD1_N 84 925 IPR040403 -
Adu05g00943 1532 Gene3D RNA polymerase II, clamp domain 76 177 IPR044893 -
Adu05g00943 1532 Gene3D RNA polymerase Rpb1, domain 3 557 703 IPR042102 -
Adu05g00943 1532 Pfam Protein of unknown function (DUF3223) 1437 1509 - -
Adu05g00943 1532 Pfam RNA polymerase Rpb1, domain 2 390 548 IPR000722 GO:0003677|GO:0003899|GO:0006351
Adu05g00943 1532 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 77 1415 - -
Adu05g00943 1532 Gene3D - 915 954 - -
Adu05g00943 1532 Gene3D - 386 556 - -
Adu05g00943 1532 Gene3D RNA polymerase ii 423 475 - -
Adu05g00943 1532 Gene3D - 1420 1511 - -
Adu05g00943 1532 PANTHER DNA-DIRECTED RNA POLYMERASE 77 1415 IPR045867 GO:0003899|GO:0006351
Adu05g00943 1532 Gene3D - 706 878 IPR038120 -
Adu05g00943 1532 Pfam RNA polymerase Rpb1, domain 4 765 848 IPR007083 GO:0003677|GO:0003899|GO:0006351
Adu05g00943 1532 SMART rpolaneu7 281 577 IPR006592 GO:0003677|GO:0003899|GO:0006351
Adu05g00943 1532 Pfam RNA polymerase Rpb1, domain 3 553 701 IPR007066 GO:0003677|GO:0003899|GO:0006351
Adu05g00943 1532 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 75 1356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00943 Adu-Chr5 12099852 12112281 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00943 K16250 - gmx:100796185 2032.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00943 05 12099852 12112281 Adu05g00943 05 12099852 12112281 ECH