Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00875 ATGACTAGTTCCTCCGCTGCCGCTCGCAAGAATCTGAGTAAGATTGCCTGCAATAGGCTTCAGAAAGAGCTTGTCGAGTGGCAGGTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTTCAAAGGTGGGTTATTGAAGTCTCTGGAGCTCCTGGCACACTTTACGCTAATGAGACCTACCAGCTTCAGGTTGATTTTCCAGAGAATTACCCCATGGAAGCTCCACAGGTCATATTTTTGCATCCTGCTCCACTGCATCCTCATATTTACAGCAACGGCCATATTTGTTTAGATATATTGTATGATTCATGGTCCCCAGCTATGACAGTTAGTTCCATCTGCATCAGCATTCTCTCAATGCTTTCAAGCTCAACTGTAAAGCAACGCCCGGAAGATAATGATCGCTATGTAAAGAACTGCAGAAACGGGAGATCGCCGAAGGAGACAAGGTGGTGGTTCCATGATGATAAAGTATAG 486 0.4568 MTSSSAAARKNLSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVIEVSGAPGTLYANETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00875 161 SUPERFAMILY UBC-like 6 126 IPR016135 -
Adu05g00875 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Adu05g00875 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 18-RELATED 11 161 - -
Adu05g00875 161 SMART ubc_7 18 161 - -
Adu05g00875 161 CDD UBCc 17 117 IPR000608 -
Adu05g00875 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Adu05g00875 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Adu05g00875 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Adu05g00875 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 11 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00875 Adu-Chr5 10873932 10876493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00875 1 112 Miscellaneous Gene Families AT2G33770 26.957 3.67e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00875 K10688 - gmx:100785024 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00875 05 10873932 10876493 Adu05g00875 05 10873932 10876493 ECH