Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00873 ATGGCGTCTTTACTTACATTTTCATCCATAATGAACCAACCTTTTAAGCTTCATCGTCCTCGTTTTACTCTCACAATCTTCAACTTCCACCGCCATTCTTCTTTCACCACCTCATCACCACGCCCACTCCCACTTTCTACTTTCAAGATCAGCGTCACAAGCTCTTCGAGAAGCTTCTCTCGTTCCAACAAATTAGAGGGTCCCACTCCCTCACTCCCTCACTTCCTACCTCAAGCTACCCTTACCTTTTCCCAACCTCAACCCCTTGTTGTACCAGACAATGAAGCTCCTTCGAAAGGTCGTATATACCATGAGACCTATGGATGTCAGATGAATGTTAATGATATGGAGATTGTCCTCTCCATCATGAACAATGCCGGCTATGGCGAAATAGTGAGTGTTCCTGAGAGTGCTGAAATAATATTCATTAATACTTGTGCCATTAGAGATAATGCTGAGCAGAAAGTGTGGCAGAGGCTTAACTATTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAATGTTGCCACCGGAAGGTCGCAGTCCTTGCGCCCTCCGAAAGTGGTTGTTTTGGGATGTATGGCCGAGAGGTTGAAGGAAAAGATACTTGATGCAGACAAAATGGTTGATGTGGTCTGCGGTCCTGATGCTTATAGGGATTTGCCGCGGTTGCTGGAGGAGGTTGACTATGGCCAGAAGGGGATCAATACTCTTCTTTCCCTTGAGGAGACGTATGCCGATATTAATCCAGTTCGGATATCCAAGAACTCGATTAGTGCTTTTGTCTCTGTGATGAGGGGTTGCAACAATATGTGTTCATTCTGTATTGTGCCATTCACAAGAGGCAGAGAGCGATCGCGCCCTGTGGATTCCATTGTGAAAGAGGTGGCAGAGCTCTGGAAAGAAGGCGTGAAAGAAGTAACACTTCTGGGGCAGAATGTGAACAGCTATAATGATGCATCCGGCATTGAGAAAGAGGTTGAACCAGGCTCCAACTGGAAATTTAGTGATGGGTTTTCCAGCATTTCTAAGGTGAAAAAAATGGGTTTAAGATTTTCTGATCTGTTGGACCGACTCTCCTTGGAATTTCCTGAGATGCGATTCAGATTCACTTCTCCACACCCTAAAGATTTTCCGGATGAATTGCTTTATCTTATGCGAGAAAGACATAATATATGCAAACTGATACATTTACCAGCACAAACTGGAAGTAGTACAGTTCTTGAGAGGATGAGACGAGGATATACTCGAGAAGCTTATTTGGAGCTTGTATATAAAATTCGCAGCATTATTCCAGATGTGGCCTTGAGCAGTGATTTCATCTGTGGATTCTGTGGGGAAACAGAGGAGGAACATTTAGACACATTGAGTCTCGTAAAAGCTGTTGGTTATGATATGGCATTCATGTTTGCTTACAGCATGAGGGAGAAAACTCATGCCCACCGAAATTATGTCGATGATGTTCCTGAGGAAACAAAGCAGAGGAGGCTAACTGAACTCATTGAGGTTTTTCGTGAGAGCACGGGCAAATGCTTCGACTCTCAGGTTGGAACCGTGCAGCTTGTGTTGGTTGAAGGACCTAACAAGAGAGCTCCGGATACCGAGCTTATGGGCAAGAGCGACAAGGGCCACAGGGTTTTGTTTGTCAATGTGCCAATACCAGACAGGGAAGATGTTAAGACCCGGCGAAATCCTGTGGTTGGCGACTATGTTGAGGTGCGCATATCAAGATCTACTAGAGCATCACTCTTTGGTGAAGCGCTTGCTATCACCAAGTTGAGTTCATTTTACAATAATCTGGAAAAAGAAGCTGTTGCCTGCAGTGTATAG 1827 0.4466 MASLLTFSSIMNQPFKLHRPRFTLTIFNFHRHSSFTTSSPRPLPLSTFKISVTSSSRSFSRSNKLEGPTPSLPHFLPQATLTFSQPQPLVVPDNEAPSKGRIYHETYGCQMNVNDMEIVLSIMNNAGYGEIVSVPESAEIIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVATGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADINPVRISKNSISAFVSVMRGCNNMCSFCIVPFTRGRERSRPVDSIVKEVAELWKEGVKEVTLLGQNVNSYNDASGIEKEVEPGSNWKFSDGFSSISKVKKMGLRFSDLLDRLSLEFPEMRFRFTSPHPKDFPDELLYLMRERHNICKLIHLPAQTGSSTVLERMRRGYTREAYLELVYKIRSIIPDVALSSDFICGFCGETEEEHLDTLSLVKAVGYDMAFMFAYSMREKTHAHRNYVDDVPEETKQRRLTELIEVFRESTGKCFDSQVGTVQLVLVEGPNKRAPDTELMGKSDKGHRVLFVNVPIPDREDVKTRRNPVVGDYVEVRISRSTRASLFGEALAITKLSSFYNNLEKEAVACSV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00873 608 SFLD Radical SAM 98 592 IPR007197 GO:0003824|GO:0051536
Adu05g00873 608 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 101 582 IPR005839 GO:0006400|GO:0016740|GO:0051539
Adu05g00873 608 SMART MiaB 257 498 IPR006638 GO:0003824|GO:0051536
Adu05g00873 608 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 60 599 - -
Adu05g00873 608 ProSiteProfiles TRAM domain profile. 512 588 IPR002792 -
Adu05g00873 608 Gene3D tm_1862 like domain 255 513 IPR023404 -
Adu05g00873 608 SFLD CDK5RAP1 98 592 - -
Adu05g00873 608 ProSitePatterns Methylthiotransferase radical SAM domain signature. 261 281 IPR020612 GO:0051539
Adu05g00873 608 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 98 588 IPR006463 GO:0006400|GO:0016740|GO:0051539
Adu05g00873 608 ProSiteProfiles Radical SAM core domain profile. 253 509 IPR007197 GO:0003824|GO:0051536
Adu05g00873 608 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 100 229 IPR013848 GO:0035596|GO:0051539
Adu05g00873 608 Pfam TRAM domain 512 587 IPR002792 -
Adu05g00873 608 Pfam Radical SAM superfamily 261 458 IPR007197 GO:0003824|GO:0051536
Adu05g00873 608 SFLD B12-binding domain containing 183 462 - -
Adu05g00873 608 Gene3D - 101 243 IPR038135 -
Adu05g00873 608 SUPERFAMILY Radical SAM enzymes 251 505 - -
Adu05g00873 608 CDD Radical_SAM 265 484 - -
Adu05g00873 608 Pfam Uncharacterized protein family UPF0004 101 213 IPR013848 GO:0035596|GO:0051539
Adu05g00873 608 TIGRFAM miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 102 585 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00873 - - gmx:100812447 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00873 05 10858813 10861975 Adu05g00873 05 10858813 10861975 ECH