Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00871 ATGCTTGGAGCCCCAAGGCGCGTCCTTGGGTTAATCCCCTATAGTCTACAAAAACTGTCACCGCGGCAACTGCACCACCACGATGTCAACAATGGTGGCGGTGGCAATAGTGAAAAAGAAGAGAGCTTTCGTTTCTACAAGAGCAGAGGTCAACACATTCTCGTCAACCCTCGAATTCTCGACACCATCGTTCGGAGGTCCGCTATCAATCCCACTGACACTGTCCTCGAGATAGGACCCGGCACCGGCAACCTCACCCTCAAGCTTCTAGAAGCCGCCCACAGGGTCGTCGCCGTCGAGATCGACGATCGTATGGTACATGTACTCGAGAAGCGCGTCCTACAACACGGCCTCCGCCACAAGCTCAACGTTATACAAAAAGATGCGTTGCGAATACTATTCCCACACTTTGATCTCGTGGTGGCGAACATTCCTTATGGGATTTCGTCACCTCTTCTGATGAAACTGGTGTATGGAGCATGCCCATTTAGGAGTGCAACTCTTCTGCTTCAGAAGGAGTTTGCTGGAAGGTTACTGGCCAATCCCGGTGACTCTGAGTTCAACCGATTGGCGGTGAACGTGAAGCTTGTGGCTGACGTGGAGTTTGTCATGGATGTTAGCAAGAGGGACTTTCTGCCATGCCCCAAAGTTGATTCCTCTGTTGTCATAATCCGCCCCAAGGATCAGGTTCCAGATGTTGATATGCGTGAGTGGAGGGCCTTCACCAGGACTTGTTTTAGCAGGAAGAACAAGACACTTGGGGCCACCTTTAAGCAAAAGTCCAAACTTTTAAGCTTGTCCAAACTGTCCAATGTATCTGGTTTTGCCGAAGAAGAAGAAGAAGATGATGATGATCATGACCATGACGAAGGGGGGTCTCAGAGGTCTTTTAAGGAAAAGATTATTGGGGTGCTTAAAACGGGAGGGTATGAAGACAAACGGCCTTCCAAACTTTCTATTGAGGAATTGCTGCATTTGCTCTCATTGTTCAATGGAGCTGGCATATATTTTCATGACTGTCGCAAGAACTCTAATGAAGATAGATTTGATGAAGATGATGGCTAG 1065 0.4845 MLGAPRRVLGLIPYSLQKLSPRQLHHHDVNNGGGGNSEKEESFRFYKSRGQHILVNPRILDTIVRRSAINPTDTVLEIGPGTGNLTLKLLEAAHRVVAVEIDDRMVHVLEKRVLQHGLRHKLNVIQKDALRILFPHFDLVVANIPYGISSPLLMKLVYGACPFRSATLLLQKEFAGRLLANPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKDQVPDVDMREWRAFTRTCFSRKNKTLGATFKQKSKLLSLSKLSNVSGFAEEEEEDDDDHDHDEGGSQRSFKEKIIGVLKTGGYEDKRPSKLSIEELLHLLSLFNGAGIYFHDCRKNSNEDRFDEDDG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00871 354 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, MITOCHONDRIAL 34 338 - -
Adu05g00871 354 CDD AdoMet_MTases 74 157 - -
Adu05g00871 354 PANTHER DIMETHYLADENOSINE TRANSFERASE 34 338 IPR001737 -
Adu05g00871 354 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 75 102 IPR020596 GO:0000154|GO:0000179|GO:0008649
Adu05g00871 354 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 45 334 IPR001737 -
Adu05g00871 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 40 331 IPR029063 -
Adu05g00871 354 Pfam Ribosomal RNA adenine dimethylase 44 260 IPR001737 -
Adu05g00871 354 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 43 328 IPR011530 GO:0000179|GO:0006364
Adu05g00871 354 Gene3D - 231 338 - -
Adu05g00871 354 SMART rADcneu6 59 228 IPR020598 GO:0000154|GO:0000179|GO:0008649
Adu05g00871 354 Gene3D Vaccinia Virus protein VP39 45 230 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00871 Adu-Chr5 10842729 10844105 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00871 K14191 - gmx:100790908 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00871 05 10842729 10844105 Adu05g00871 05 10842729 10844105 ECH