Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00487 ATGGACTCACAGCAGAGCAATCTATTCGACACCGCTTCGCAACCCGACACCGCCAACGACGCGTACACCTTCCTCGAATTCAACACTCAGGGCGAAGATTTCGACTACCCGGAGTTCCGCGACCCGATTAGGTCCTCCGTGGCGTGGCCCACTCCCTCTGATTCGCTTGCCGATACGTCGGAGCGCGGTGGCGGAGGGGGAGGAGCTGGGTCGGATCACCAGTCGGATGCCTCTCCGGTTTCGGCAGCTGCCGGGAGTGGCACTAAGGGGAGGTCAGGGAGCAGCAGTGGCGGGAACAGCCAGATGGTGGATGCATTGGTCGCGGGGATGAGCGGGTTGAATTTTGAGGACACCGGGGATGATGATAATTTCGACTATGGCAAAGGGGATTTCACCGAGCATGCTTGCCGGTATTGTGGGGTCTCTAATCCAGCTTGTGTTGTGAGGTGTAACGTGCCTTCATGTCGTAAATGGTTCTGTAATTCGCGGGGGAACACCTCTGGATCTCATATCGTCAATCACCTGGTTCGGGCAAAACACAAGGAGGTATGTCTGCACAAAGATAGTCCATTGGGGGAAACAATTCTTGAATGCTACAACTGTGGGTGTCGGAATGTGTTTCTACTGGGATTTATTTCTGCGAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGTGAGCCTTGCTTGAGTGTCAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAGTGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAATGGCTTGTCAAGGTCCCATCTGAACAGGAGCAGTTAAGGGCACGCCAGATAAGTGCACAGCAAATAAATAAGGTGGAAGAGTTATGGAAGACAAATCCAGATGCTTCCTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGCCCGTGGCTTTAAAATACGAAGATGCATATCAGTATCAAAATGTATTTGCTCCTCTTATCAAGCTTGAAGCTGATTATGATAAGATGATGAAGGAATCTCAAAGCAAGGACAACGTGACAATTAGGTGGGATATTGGTCTTAACAAGAAGCGTGTTGCATACTTTGTCTTTCCAAAGGAAGATAATGAGTTACGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCAGCACATCCTGCCTGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATATAAACCATGGTTTCAGTGTTGATTTTGTTTGGAAAAGTACAAGCTTTGACAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTAAGCGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTGCAGATGATGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCAGGACTTCCTGAGCTTAATGCATCTCAAGTTTTTGCGGTTAAAAGTGTCCTTCAGAGACCTATTAGTTTGATTCAAGGTCCCCCTGGAACCGGGAAGACTGTAACTTCTGCCGCACTTGTATATCACATGGCCAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGCAATGTTGCTGTGGACCAGCTGGCTGAAAAAATAAGTGCTACTGGGTTAAAGGTTGTTCGGCTTTGTGCAAAGTCAAGGGAAGCTGTAAGTTCTCCTGTTGAGCATTTAACACTTCATTACCAGGTTCGGCATCTTGACACATCCGACAAGAGTGAACTTCATAAATTACAACAGCTGAAGGATGAACAAGGAGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAAAGTGCTGATGTGATATGCTGTACATGTGTTGGTGCTGGGGATCCTCGACTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCTACTCAAGCAACAGAACCTGAGTGCCTCATTCCATTGGTTCTTGGTGCAAAGCAGGTGGTTCTTGTTGGTGACCATTGTCAACTTGGGCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGGCTAGCGCAGTCGCTTTTTGAACGCCTTGTCCTACTTGGTGTTAAACCAATTAGGTTACAGGTTCAGTACCGTATGCATCCATGTCTATCTGAATTTCCCTCAAACAGCTTTTACGAAGGGACCCTGCAAAATGGCGTTACTGTTAATGAAAGGCAGTTGTCAGGAATCGACTTCCCATGGCCTGTGCCAAACCGTCCCATGTTTTTCTATGTTCAGATGGGTCAAGAAGAGATAAGTGCAAGTGGAACGTCTTATTTAAATAGGACCGAAGCTGCAAATGTAGAAAAGATTGTCACCACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTTATAACACCTTATGAGGGTCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGGGCTCTTAGACAACAACTTTACAAGGAAATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATAATTCTATCTTGTGTTAGAAGTAACGAACATCAGGGCATTGGGTTCTTGAATGATCCTAGGAGGCTCAATGTTGCTTTGACACGAGCAAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTGAGCAAACAACCTCTATGGAATAGCTTATTGACACACTACAAGGAACATGAATGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAGAGTATGGTTCAATTCCAGAAACCCAAGAAGATTTACAATGAAAGAAGGCTCTTTTATGGTGGTGGACCTGGAATTGCGGCTAATGATACTTTTGGTTCTGTTGGTGCTGGCACTACTTCAGACCGAAGGAGCAGCCGTGGAAGGGGATCTTATGTTCCGCCTGGCCCACCAAATGGGACTCAGAAGCCTGGAGTGCATCCTGCCGGGTATCCTATTCCAAGGGTTCCCTTGCCTCCTTTCCATGGTGGTCCCCAATCTCAGCCATATGCTATTCCATCCCGTGGAGCTGTACATGGTCCTGTTGGGGCAGTTCCTCATGTACCATCACCAGGTAGTCGGGGTTTTGGGGCTGGAAGAGGTAATTCTGGTGCTCCAGTTGGCAGTCTTCCTCACCAAGGAACGCAACAGCCTATTGGGAATATCGGATCTACATATAATTTTCCTGCTTTGGAGAGTCCAAACAGCCAGCCATCTGTTGGTGGTCCGTTATCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGGACAGGTCAATCATTTCGAGATCAATTTTCTGTTCCTGGAATGTCTCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCGCATGTTCCTTATAATGTTGCTGATTTTGCTACCCAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACTCAAGGAGCGCAAGGTGGATTCCCAGGGAACTTTATGAACCAAAACTCTCAAGCCGGATATTCACGTTTTGGTTCTGGAAATGAATTTATGTCTCAGGACTACATGGCCCATGGATCACAAGGCCTTTTCACTCAAGCTGGATTTGGTGATCCCTTGCAAGATGATGCAACACAGAGCCATTTTGGTGTTGCTAACGCCAATCCTCTCCAATCACAGATGAATTCTCTCTATTCCCAGCCTTTTTCTCATTACAACACACAGCCAATGAACTTGCAGGCTTCCCAACAGCAGCCTCAGGGTCAGAGTTCCCAAAATCAAAAAATTCAGTATAGCGGTTGA 3795 0.463 MDSQQSNLFDTASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSSVAWPTPSDSLADTSERGGGGGGAGSDHQSDASPVSAAAGSGTKGRSGSSSGGNSQMVDALVAGMSGLNFEDTGDDDNFDYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMMRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDTFGSVGAGTTSDRRSSRGRGSYVPPGPPNGTQKPGVHPAGYPIPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPVGSLPHQGTQQPIGNIGSTYNFPALESPNSQPSVGGPLSQPGFANNMPVQGTGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFATQASQSGYAVDYATQGAQGGFPGNFMNQNSQAGYSRFGSGNEFMSQDYMAHGSQGLFTQAGFGDPLQDDATQSHFGVANANPLQSQMNSLYSQPFSHYNTQPMNLQASQQQPQGQSSQNQKIQYSG 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00487 1264 CDD SF1_C_Upf1 720 909 IPR041679 -
Adu05g00487 1264 Gene3D - 719 930 IPR027417 -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 1 101 - -
Adu05g00487 1264 Gene3D - 340 428 - -
Adu05g00487 1264 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Adu05g00487 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 956 970 - -
Adu05g00487 1264 CDD 1B_UPF1-like 340 427 IPR040812 -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 1 26 - -
Adu05g00487 1264 Pfam AAA domain 697 892 IPR041679 -
Adu05g00487 1264 CDD DEXXQc_UPF1 484 719 - -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 1231 1264 - -
Adu05g00487 1264 Gene3D - 570 622 - -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 993 1009 - -
Adu05g00487 1264 PANTHER DNA2/NAM7 HELICASE FAMILY 110 1034 IPR045055 -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 1051 1093 - -
Adu05g00487 1264 MobiDBLite consensus disorder prediction 74 101 - -
Adu05g00487 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 943 IPR027417 -
Adu05g00487 1264 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 110 1034 - -
Adu05g00487 1264 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Adu05g00487 1264 Pfam AAA domain 584 687 IPR041677 GO:0004386
Adu05g00487 1264 Pfam Type III restriction enzyme, res subunit 490 552 IPR006935 GO:0003677|GO:0005524|GO:0016787
Adu05g00487 1264 MobiDBLite consensus disorder prediction 953 1093 - -
Adu05g00487 1264 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Adu05g00487 1264 Gene3D - 448 718 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00487 Adu-Chr5 5134872 5147076 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00487 K14326 - gmx:100795594 2393.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00487 05 5134872 5147076 Adu05g00487 05 5134872 5147076 ECH