Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00448 ATGGCGTCGGTACAACAAAGCACCTCTTCTGCTTCCTCTAAAAGGTGGCTTCCTCTCGAAGCTAATCCTGATGTCATGAACCAGTTCCTATGGGGGCTTGGGCTTCCACAGGATGAAGCAGAATGCTGTGATGTTTATGGCTTAGATGATCAGCTTCTCGAAATGGTTCCTAAGCCTGTTCTTGCTGTTCTTTTCCTTTATCCTATAACCACTCAGACTGAAGAAGAGAGGTTGCAACAGGAACATGAAAAAAGGGAATATAGCAGTAAAGTGTATTTTATGAAGCAAACTGTGGGTAATGCTTGTGGTACAGTAGGATTGCTTCATGCTCTTGGCAACCCCACGTCTGAGATTAAGCTTGTTGATGGGTCATTCTTGGATAAGTTCTTTAAATCTACTGCAAGCATGGATCCAATGCAGCGTGCAAAATTCCTTGAGAATGATGGAGAAATGGAAGTTGCTCATTCAGTGGCAGCAAATGCTGGCGATACAGAGGCAGCAGATAATGCATATGCTCATTTTATCTGCTTTGCTTGTGTGGATGGTCAACTTTATGAGCTTGATGGAAGAAAGTCAGAGCCAATATCTCATGGTCCATCTTCGCCAAGTACTTTGTTGAAGGATGCAGCTAAAGTGATTAAGAGCATGATCCAGAAAAATCCAGACTCCATCAACTTCAATGTCATTGCTGTCTCAAAGAAATCCAAGGATGAATTCTAA 720 0.425 MASVQQSTSSASSKRWLPLEANPDVMNQFLWGLGLPQDEAECCDVYGLDDQLLEMVPKPVLAVLFLYPITTQTEEERLQQEHEKREYSSKVYFMKQTVGNACGTVGLLHALGNPTSEIKLVDGSFLDKFFKSTASMDPMQRAKFLENDGEMEVAHSVAANAGDTEAADNAYAHFICFACVDGQLYELDGRKSEPISHGPSSPSTLLKDAAKVIKSMIQKNPDSINFNVIAVSKKSKDEF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00448 239 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 18 35 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 56 68 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 96 113 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 168 179 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 184 194 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 SUPERFAMILY Cysteine proteinases 14 233 IPR038765 -
Adu05g00448 239 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 238 - -
Adu05g00448 239 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 238 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 Gene3D - 10 234 IPR036959 GO:0004843|GO:0006511
Adu05g00448 239 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 16 217 IPR001578 GO:0004843|GO:0006511
Adu05g00448 239 CDD Peptidase_C12_UCH_L1_L3 16 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00448 Adu-Chr5 4654726 4657139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00448 K05609 - gmx:100527718 393.66