Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00347 ATGGCGGTTCCACTCAGAATGAGCAACAACAATAAGCGTGCTGTGCTTGCTCGTTTGAAATCCCTCATCAACACACAGCAGTTGCAGAGGTTCTGCACTTCTATGCAGCCCAAAGGGAAACTGGATGATCGCTTGTCTCCAAAAGGGGACTTAGATTACTCGGCTCTGAAAGAACGCAATGACTTCTTGAAATGGAAGACTCTGGACGCTAGTAAGCTTGGTATAACTACTTCTAAGCTTTCGAATCTATCTCAGATTGTCTTGAAGCATCTTGACCTCGTAGGATTTAAGTCCTATTTGGTAGGTGGGTGTGTGAGAGATCTACTATTGAATAGAACTCCAAAAGATTTTGATGTCATCACCACAGCGGAGCTTCATGAGGTGAAAAAGCATTGTCGTAAAATAGGCCATGCTATAATTGTAGGGCGACGTTTTCCAGTATGCCTTGTTAATGTAAAAGGTTCTCAAATAGAGATAACCAGTTTTGCGACAGAGGCACAGACATTTGAAGGGAGTGACCAAGTTCGACGCACTCTATTGCCCAAATCCAAATGCAATAATGAAGAAGACTTAATTCGCTGCAAAAACTCCTTGTACAGAGACTTCACAATTAATAGTTTATTTTATGACCCCTCTGCTAATAAGATATATGATTATGCCAATGGAATCGCTGATTTGAGGTCCTTGAAGCTTGAAACTGTGATCCCTGCTCAACTGTCCTTCAAAGAGGACCCTGGGAGAATTTTGCGTGGCTTCAGAATGGCAGCTCGACTAGGTTTATCATTATCAAGGGAGATTGAGGCTGCTATTTTGGCTTATTCTTCACAAGTTAAGAACATGAACAAGACTAAATTACTGACTGAGGTGAACTATATGCTGTCTTATGGAGCTGCTGAGCCATCTTTGCGCTTGCTCTGGAAATTCAAGTTGCTTGAGTTTTTATTTCCTGTGCATGCAGCATATCTTGATGAACAGGTGGATAAAGAAGGTGTTCTTGCTTCCAATATGTTGATGAAATTATTCCTCCATCTGGATAATTTGGTGGCATGTGATCGGCCTTCTGATTGCACTCTATGGATTGGGTTGCTAGCATTTCACCTGGCATTAATAAATAACCCGCAAGAAGCCCTTGTGGTGTGGGCTCTTGCTTCTATTCTATATCATGGGAATTGGAAAGACGGTGTTAAATTCGCTAAAGAACATGCAGAAGTGACTGTTAATTTTGCACCTGAAATAAGGATGTCCTGTTTGAACAAATCGGAAGAAGAAATTGCAAAAGCAGTCACTGAATTGGCATCTCATGTGATACACTCTGTATGTGTGCTGGTTAATAATGATAGTCTTCGTCAATCCATGGCTAGATATCCATCTTCTCCATGCTCTGGCACTGTATTTGTACCAGGGAAAAAAGGGCAGATTGTTGGTGATATTTTCAGAGTGCTAGTCAATGATGTCCAACTGTATAGGAGTGAAAGAAAAGGTTCAAAGATAAAATATGGCATGCTTAGCCGGGGCAGTATTGAAGAGACTAGATATGTTTTCGGCAAAATTGTTCTCAACACTATGATTAGTTGCATTGTTGGGAACAAGGATGATTTTGAGGCTGAAAAATGTCATCTTAAGACTCAGGACACTGAGGAAAGTGGCCAGTCGCAAATTTCAAATTCAGTAATCCATAAATCGGTTGCAAGGAAACATGAAAGACAAGCTTTATCACCAAGTCCAGAAAGTAAGCAAGGAAAAATCAAGAAACAGAAACTGGTTGACAATGACCGTGTTCCAGAGCAGAAAGTGGACATGGCGAGCCATGAATTGGTTTTCAAGGAAACCAGTCAAGAGTGGCAGAAGCAAGCAAAATTAACTCAGAAGGTTGATCCATCTATGATGAAGGGCTTTGTGCCGAAAATGAAAAAACATCCAATAAAGCATCCAGCGAGGCCTATGAAGACAGTCAAACAGAACTCACACACACCATCACAATTTAAAGTGTCTAAGAATCATCATGAAGTAGCTGACAGCTGCAACATAAATGTGGATGCAAAAGCAACAAATAAGTCACACTTAAAGAAGAAAAGGTCCCAATCATCATCTGATGAAAAAGTTTTGAAGCATTCCCTCTCCAGTCTCTTCAGAAAATGA 2139 0.4077 MAVPLRMSNNNKRAVLARLKSLINTQQLQRFCTSMQPKGKLDDRLSPKGDLDYSALKERNDFLKWKTLDASKLGITTSKLSNLSQIVLKHLDLVGFKSYLVGGCVRDLLLNRTPKDFDVITTAELHEVKKHCRKIGHAIIVGRRFPVCLVNVKGSQIEITSFATEAQTFEGSDQVRRTLLPKSKCNNEEDLIRCKNSLYRDFTINSLFYDPSANKIYDYANGIADLRSLKLETVIPAQLSFKEDPGRILRGFRMAARLGLSLSREIEAAILAYSSQVKNMNKTKLLTEVNYMLSYGAAEPSLRLLWKFKLLEFLFPVHAAYLDEQVDKEGVLASNMLMKLFLHLDNLVACDRPSDCTLWIGLLAFHLALINNPQEALVVWALASILYHGNWKDGVKFAKEHAEVTVNFAPEIRMSCLNKSEEEIAKAVTELASHVIHSVCVLVNNDSLRQSMARYPSSPCSGTVFVPGKKGQIVGDIFRVLVNDVQLYRSERKGSKIKYGMLSRGSIEETRYVFGKIVLNTMISCIVGNKDDFEAEKCHLKTQDTEESGQSQISNSVIHKSVARKHERQALSPSPESKQGKIKKQKLVDNDRVPEQKVDMASHELVFKETSQEWQKQAKLTQKVDPSMMKGFVPKMKKHPIKHPARPMKTVKQNSHTPSQFKVSKNHHEVADSCNINVDAKATNKSHLKKKRSQSSSDEKVLKHSLSSLFRK 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00347 712 Pfam Probable RNA and SrmB- binding site of polymerase A 259 321 IPR032828 -
Adu05g00347 712 Pfam Poly A polymerase head domain 99 230 IPR002646 GO:0003723|GO:0006396|GO:0016779
Adu05g00347 712 SUPERFAMILY Poly A polymerase C-terminal region-like 231 395 - -
Adu05g00347 712 MobiDBLite consensus disorder prediction 638 712 - -
Adu05g00347 712 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 10 711 - -
Adu05g00347 712 MobiDBLite consensus disorder prediction 544 594 - -
Adu05g00347 712 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 10 711 - -
Adu05g00347 712 MobiDBLite consensus disorder prediction 579 594 - -
Adu05g00347 712 MobiDBLite consensus disorder prediction 545 559 - -
Adu05g00347 712 Gene3D - 231 453 - -
Adu05g00347 712 SUPERFAMILY Nucleotidyltransferase 73 227 IPR043519 -
Adu05g00347 712 CDD NT_ClassII-CCAase 82 227 IPR002646 GO:0003723|GO:0006396|GO:0016779
Adu05g00347 712 Gene3D Beta Polymerase, domain 2 65 228 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00347 Adu-Chr5 3690506 3695973 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00347 - - ccaj:109801320 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00347 05 3690506 3695973 Adu05g00347 05 3690506 3695973 ECH