LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu05g00327	ATGGCGGCGCCAAGCATAAGACCTTTGCCGGAGGCCGTTCGCAGTTCAGTGCGTTCCGGCATCTTCTTGTTCGATTCCACCCGCGTCGTCGAGGAACTAGTTTTCAATAGCCTCGATGCTGGTGCCACAAAGGTTTCTGTGTTTGTTAGCATTGGGAGCTGTTACGTAAAAGTAGTAGATGACGGAGGTGGAATTGCTCGAGATGGACTTGAATTGGTGGGAGAAAGATATGCAACATCAAAACTTCGTAATTTGGATGACTTGAATGCCACCAGCGGAAACTTTGGTTTTCGTGGGGAAGCTTTAGCTTCCATTTCCGAAGTCTCTTTGTTGGAAATTGTGACAAGAACATACGGAAGGCCCAATGGATATAGAAAAGTATTGAAGGGGTGCAAATGCTTGTATCTTGGTGTTGATGATGATAGGAAGGAAGTTGGTACAACAGTTGCTGTCCGCGATTTATTTTACAACCAACCAGTTCGGAGGAAATACATGCAATCCAGTCCCAATAAGGTGCTGCAATCAATCAAGAAATGTGTACAGCGGCTTGCTCTTGTGCGTCCAAATGTTTCCTTCAAAGTTATCGATGTTGAAAGAGATGATGAGCTTTTCTGCACACAAATTGCTTCTTCTCCACTAGCACTTTTGACCAGCGGCTTTGGGGAGGAGGTATCAAGCTTTCTTCAAGCTTTAGAAGTTGAGAATGATATCATAAAGCTATCTGGATATGTCTCTGGCACTTGCAATGCTTTGAATATGAAGGATTGGGATTCTATACTCAACTTCATTGAGAAGGTCATAAAAGAATGCTGGGAGGAAAACCTAGATTGTGGAGAGTCCTTCAATCAGTCCACTTACATGGTACATGAAGATCAACCTTGGGAAGATCTCAACATTCTTTCAACAGAAGCAGGCAAGCTAACCAAAGATGAATATCATCAATCTGACAGGGAAGATGTTAGAACCTCTCTTGGTTACTTGTGTCAAGGGACTGAAATATTGAGAGAGAAACAAAACAAGAGAGACTTCTCTTATCAGACTCTTTTTTCTGGAAATTTAGTGGATGATTCATATGCCAGATGCATGCCAACTGTTGGAAAGCATAAGAGTTTATTGATGTATGATAAGAATGGTCAATCACTAGGAGATTACTTTTCAGATGATAATGTTCCTAGTGCAGAAATTTTATTTGATAATGTACCTTTTGATGCACCAAGTTCTTCAAAGGGAAGAAAATCCTGTGCTGTAGGAGCTGATATGATCAACGAATCATTTGAAGACTGCTTACTTAATGATAGCCATGGGTTTTGTAACAACGTAGAGGTAAATGAGGATTTTCAAAAGCCTTTTCTGAAAAGCTGTTCTATAAAAGGAAGTATCCTGCGAGAGAAGGCTTTCTTTATAAATGATGAACATGAACTCCACACTGATGGCTTTTGGAGAAAACAAACAAGGGAAGACTGTGACAGTCTGAAGGACTATGGTGCTCAACGCTGTTCAAATGTGAAAAAATTAAAATTGTCTAGAGATTGTGATTTTTTCTCTAGAGCAGTGGCTGAAGATCTTCCATATTCATACTATTCAGCAGCACAAACAATGAACTCTGGGACTGTTGATCAGCTATTTACTTCTGAATGGCATTCTGTCTATCAAGAAGCCTCATCTCCAGCCAGTGCATGGGGTGGTGATCATGCAGCTGATATTAATGATCTTGGACTTCATCGTACAATACTTACTGATGAGGAAGAAAATGACTGTGACTTTGTCTACGATATTTCAAGGAATGCCAAACGAAATGTCTTTGAATTTACTGATGCTATTGATTCGGAAATGATATTCGACACAGAGGTTGACTGGCCTGATCGTGGTCATAAATATTCTACTAAAAAAAGGCCAGATGTTTTATTTGAGGAATCTGAGTGCTTGTTGCCTGATACATGTGTTGAAAAGTGCAAAAGCCATGACAAGAACAAAAGCAGGATGGATCATTTGAGACATCCAGCATTGGACAAGAATAATGAAAGATCTAAAAGAAGCTCTTCAGCTCCACCATTCCATAAAAGGAAAAGGAGGTTTGTATCTTTAAATCAGCCATCAGAAATGATAGCCAAAAGGCCTACTGGCCAAGCCTCCAATCCTGCTTTCAACCATCCATCAGGAATGATAGCCAAAAGACTTACTGGCCAAGCCTCCAATCCTGCTTTCAACCATCGAGCTCTTGTTGACCATTTCTCTAGCTACTCAACTGTTGGGAATAATTTTTCACTGACCTCTTCAAATTACCCTGATCATAGATCTAATGTGAAACAGAGATCAGATGCTCTGGGAGATGCACATTGTAATGACAACAAGGAGATTGATGGGTTTGATAGTTTCAACATTCAGAACAATGCTCCACTCAGAGAGTTGTTCTCAAGGGAAGCACAAGATTCCATAGATCAGGGGATCAAATGGAGGACATGCTCACCTGAAATTCCAAAAAACAATAAAGTGGTTGAAGTTCAAAGTCAAAACAATATACTTGATATCTCTTCGGGATTTTTGCATCTTGCTGGAGATTCATTAATACCTGAAGCAATCAGTAAGAAATGCCTTGAAGATGCCAAAGTTCTCCATCAGGTGGATAAGAAATTCATTCCAGTTGTGGCTGGTGGAACCCTTGCTGTTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTGGAAGAATTGCGGCAAAAGGTATTATCTGGAGAAGCAAAAGGAATAACCCATCTGGATGCTGAACAGGAACTGGTGCTGCCAGAGATTGGTTATCAACTACTTCATAGTTATAACGAACAGATTAAAGATTGGGGTTGGATGTGCAACATTCATGTTCATTCTGAACCCTATAAAAGGAATCTGGATGTTCTCAACAGACAACCTATGGCCGTCACACTTATAGCGGTTCCTTGTATTTTAGGTGTCAACTTAAATGATGTTGATCTTTTAGAGTTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAACTATGCCGCCCTCTGTTATACGAGTCCTAAATTTGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCGTCAGAGTGTTCCCTTATAGTTGAAGAGCTAAAGCATACGTCACTTTGTTTCCAATGCGCTCATGGGCGACCGACAACTGTTCCTCTTGTCAACTTGGAGGCATTGCATAATCAGATAGCCAAGCTTGGACAAATGAATGGCTGCTCAAATGATAAGTTTCATGGATTACAAAGGCACAAAGTATGTGTTGAACGCACAGCAGAGCGTTTATCTTCTGCTAGAGGAACCTGA	3324	0.4073	MAAPSIRPLPEAVRSSVRSGIFLFDSTRVVEELVFNSLDAGATKVSVFVSIGSCYVKVVDDGGGIARDGLELVGERYATSKLRNLDDLNATSGNFGFRGEALASISEVSLLEIVTRTYGRPNGYRKVLKGCKCLYLGVDDDRKEVGTTVAVRDLFYNQPVRRKYMQSSPNKVLQSIKKCVQRLALVRPNVSFKVIDVERDDELFCTQIASSPLALLTSGFGEEVSSFLQALEVENDIIKLSGYVSGTCNALNMKDWDSILNFIEKVIKECWEENLDCGESFNQSTYMVHEDQPWEDLNILSTEAGKLTKDEYHQSDREDVRTSLGYLCQGTEILREKQNKRDFSYQTLFSGNLVDDSYARCMPTVGKHKSLLMYDKNGQSLGDYFSDDNVPSAEILFDNVPFDAPSSSKGRKSCAVGADMINESFEDCLLNDSHGFCNNVEVNEDFQKPFLKSCSIKGSILREKAFFINDEHELHTDGFWRKQTREDCDSLKDYGAQRCSNVKKLKLSRDCDFFSRAVAEDLPYSYYSAAQTMNSGTVDQLFTSEWHSVYQEASSPASAWGGDHAADINDLGLHRTILTDEEENDCDFVYDISRNAKRNVFEFTDAIDSEMIFDTEVDWPDRGHKYSTKKRPDVLFEESECLLPDTCVEKCKSHDKNKSRMDHLRHPALDKNNERSKRSSSAPPFHKRKRRFVSLNQPSEMIAKRPTGQASNPAFNHPSGMIAKRLTGQASNPAFNHRALVDHFSSYSTVGNNFSLTSSNYPDHRSNVKQRSDALGDAHCNDNKEIDGFDSFNIQNNAPLRELFSREAQDSIDQGIKWRTCSPEIPKNNKVVEVQSQNNILDISSGFLHLAGDSLIPEAISKKCLEDAKVLHQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRQKVLSGEAKGITHLDAEQELVLPEIGYQLLHSYNEQIKDWGWMCNIHVHSEPYKRNLDVLNRQPMAVTLIAVPCILGVNLNDVDLLEFLQQLADTDGSSTMPPSVIRVLNLKACRGAIMFGDSLLPSECSLIVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLGQMNGCSNDKFHGLQRHKVCVERTAERLSSARGT	1107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu05g00327	1107	CDD	HATPase_MutL-MLH-PMS-like	13	195	-	-
	Adu05g00327	1107	MobiDBLite	consensus disorder prediction	652	681	-	-
	Adu05g00327	1107	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	27	203	IPR036890	-
	Adu05g00327	1107	ProSitePatterns	DNA mismatch repair proteins mutL / hexB / PMS1 signature.	96	102	IPR014762	-
	Adu05g00327	1107	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	27	120	-	-
	Adu05g00327	1107	Gene3D	-	873	1060	IPR042120	-
	Adu05g00327	1107	Pfam	MutL C terminal dimerisation domain	869	1029	IPR014790	GO:0005524\|GO:0006298
	Adu05g00327	1107	Gene3D	-	914	1024	IPR042121	-
	Adu05g00327	1107	Gene3D	-	5	209	IPR036890	-
	Adu05g00327	1107	SUPERFAMILY	DNA mismatch repair protein MutL	868	1060	IPR037198	-
	Adu05g00327	1107	SMART	MutL_C_2	870	1029	IPR014790	GO:0005524\|GO:0006298
	Adu05g00327	1107	MobiDBLite	consensus disorder prediction	652	697	-	-
	Adu05g00327	1107	PANTHER	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	4	1065	IPR038973	GO:0006298\|GO:0016887\|GO:0032300\|GO:0140664
	Adu05g00327	1107	PANTHER	DNA MISMATCH REPAIR PROTEIN MLH3-RELATED	4	1065	IPR028830	GO:0006298

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu05g00327	Adu-Chr5	3477073	3485035	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu05g00327	K08739		-	gmx:100788019	950.273

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu05g00327	05	3477073	3485035	Adu05g00327	05	3477073	3485035	ECH