LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu05g00260	ATGGCGTTGCACCGCTTTTACCAGAAGTCACCCGGGGCGGTTTCGCACTTGGTTTCCAATTTTAGGAAGAGGCTGTGCGATAATGATCCTGGTGTCATGGGTGCCTCCCTTTGCCCGCTCTTTGATCTTGTAACCATTGATGCCAAATCTTATAAGGATCTTGTGAGTAGCTTTGTCAGTATCTTGAAGCAGGTTGCTGAAAGGAGGCTTCCTAAGAGCTATGATTATCATCAGATGCCCGCGCCGTTCATTCAGGTTAAGTTGCTAAAGATATTGGCACTGTTGGGGAGTGGGGATAAGCAAGCTAGTGAGAGCATGTATACTGTTCTTGGTGATATTATCAGGAAGAGCGATTCATCAACTAATATTGGGAATGCCGTTCTGTATGAGTGCATTTGTTGTGTGGCTTCCATACACCCCAATCCCAAGTTGTTAGAATCCGCTGCAGATGTTATTGCAAAGTTCTTGAAGAGTGACAGTCATAATCTCAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTGAGTCCGCAGATAGCAGAACAACACCAACTAGCTGTGATTGACTGCTTAGAGGACCCTGATGATACTCTGAAGCGAAAGACTTTTGAATTGCTATATAAAATGACCAAGTCCTCCAATGTCGAAGTGATCGTTGACCGCATGGTTGACTACATGATCAGCATAAGTGATGACCATTATAAAACCTATATAGCATCTCGTTGTGTGGAACTTGCTGAGCAATTTGCTCCAAGTAATCATTGGTTTATACAGACCATGAATAAAGTTTTTGAGCATGCCGGAGATCTTGTGAACATTAAGGTGGCACATAATCTAATGAGGTTGATTGCTGAAGGGTTTGGAGAGGATGATGATGCTACAGATAGCCAGTTGAGATCATCTGCTGTTGAATCATATTTGCGCATTATTGGAGAGCCAAAGCTTCCATCCATGTTTCTTCAGGTCATCTGTTGGGTTCTGGGTGAGTACGGCACAGCTGATGGAAAACATTCTGCTTCATATATCAGTGGAAAGTTATGTGACATTGCAGAAGCATATTCAAATGATGAAACTGTTAAGGCATATGCAATTTCAGCATTAATGAAAATTTATGCTTTTGAAGTAGCAGCTGGGAGGAAAGTGGATATGCTACCTGAGTGTCAATCTTTTATTGAAGAATTATTAGCATCTCACTCAACAGATTTGCAGCAACGTGCTTATGAATTGCAAGCCGTTGTTGGTTTGGATGCACAAGCTGTTCAAGCAATATTGCCACGAGACACAAGATGTGAAGAAATTGAGGTTGATAAGGACCTTTCTTTCCTCAATGGTTATGTAGATCAAGCAATAGAAAAGGGTGCTCAGCCTTACATTGCTGAGGATGAGCGTAATGGGATGGGTAATGTGAGCAACCTCAGAAGCCAAGACCAACATGAATCGATACAGCATGGTCTGAGATTTGAGGCATATGAACTTCCAAAGCCTCCAATGCAATCAAAAGTTGATCCAGTTTCATCAACAGATGTTGTTCCAGTACCTGAGGCATTATCTTATAGGGAGACCCATCCCATATCATCAGTGGGATCGACATCAGAGGCTGGGTCATCAGAGCTTAAGCTACGTCTTGATGGTGTTCAGAAGAAGTGGGGTAGGCCAACTTATTCGACTCCAACATCATCTACCACGAATTCTCCTTCCGAAAAACCTGCAAATGGTGCTAGCCATGTGGATAGTGCAACAGCTTCCTATTCAAAGTCACGTGATAGTCAGAATACAAAAAAGACAGAGATTGATCCAGAAAAGCAGAAGCTTGCTGCTTCATTGTTTGGTGGATCATCACAACCTGAGAGAAGATCATCCACTGGTCATAAGGCTTCAAGATCTAGTGGTGGTGCTGCAGATGGATCTCGCGGATCTAAAGCTGTGGAGAAAACGATTCAACAACCACCGCCTCCAGATTTGCTCGACTTCAGTGATGAACCAACTGTTACTAGTGCCCTTCCTTCCGTTGATCCCTTCAAGCAATTGGAAGGACTTCTTGACTCAAGCATGAGTTCTACAACAAACCATAATGCAGGTACTGCCACTATTGCACCTGATATTATGTCACTCTATGGAGACAGTACTGCAAGTCAGGATAGTTTAGATATTTTTCATGGGTTGTCGACTGAACCTACTGGGGCTACTAGTGGAGAAACAACTGTGACAACTTTGCCGCAATCTGTGAAGGGTCCAAACGCTAAAGATGCCTTGGAGAAGGATGCATTAGTGAGGCAGATGGGGGTGAACCCTACTAGTCAAAATCCCAACTTGTTCAGGGACTTGCTTGGCTAA	2340	0.4342	MALHRFYQKSPGAVSHLVSNFRKRLCDNDPGVMGASLCPLFDLVTIDAKSYKDLVSSFVSILKQVAERRLPKSYDYHQMPAPFIQVKLLKILALLGSGDKQASESMYTVLGDIIRKSDSSTNIGNAVLYECICCVASIHPNPKLLESAADVIAKFLKSDSHNLKYMGIDALGRLIKLSPQIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMVDYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDATDSQLRSSAVESYLRIIGEPKLPSMFLQVICWVLGEYGTADGKHSASYISGKLCDIAEAYSNDETVKAYAISALMKIYAFEVAAGRKVDMLPECQSFIEELLASHSTDLQQRAYELQAVVGLDAQAVQAILPRDTRCEEIEVDKDLSFLNGYVDQAIEKGAQPYIAEDERNGMGNVSNLRSQDQHESIQHGLRFEAYELPKPPMQSKVDPVSSTDVVPVPEALSYRETHPISSVGSTSEAGSSELKLRLDGVQKKWGRPTYSTPTSSTTNSPSEKPANGASHVDSATASYSKSRDSQNTKKTEIDPEKQKLAASLFGGSSQPERRSSTGHKASRSSGGAADGSRGSKAVEKTIQQPPPPDLLDFSDEPTVTSALPSVDPFKQLEGLLDSSMSSTTNHNAGTATIAPDIMSLYGDSTASQDSLDIFHGLSTEPTGATSGETTVTTLPQSVKGPNAKDALEKDALVRQMGVNPTSQNPNLFRDLLG	779

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu05g00260	779	MobiDBLite	consensus disorder prediction	523	655	-	-
	Adu05g00260	779	MobiDBLite	consensus disorder prediction	553	590	-	-
	Adu05g00260	779	Pfam	Adaptin N terminal region	3	414	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Adu05g00260	779	MobiDBLite	consensus disorder prediction	725	745	-	-
	Adu05g00260	779	PANTHER	AP-4 COMPLEX SUBUNIT EPSILON-1	1	775	-	-
	Adu05g00260	779	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	1	775	-	-
	Adu05g00260	779	SUPERFAMILY	ARM repeat	2	429	IPR016024	-
	Adu05g00260	779	PIRSF	AP4_epsilon	676	779	IPR017109	GO:0015031\|GO:0030124
	Adu05g00260	779	PIRSF	AP4_epsilon	1	511	IPR017109	GO:0015031\|GO:0030124
	Adu05g00260	779	PIRSF	AP4_epsilon	467	650	IPR017109	GO:0015031\|GO:0030124
	Adu05g00260	779	MobiDBLite	consensus disorder prediction	524	538	-	-
	Adu05g00260	779	Gene3D	-	1	429	IPR011989	-
	Adu05g00260	779	MobiDBLite	consensus disorder prediction	725	749	-	-
	Adu05g00260	779	MobiDBLite	consensus disorder prediction	609	629	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu05g00260	Adu-Chr5	2771177	2777849	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu05g00260	K12400		-	gmx:100819573	1210.67

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu05g00260	05	2771177	2777849	Adu05g00260	05	2771177	2777849	ECH