Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02504 ATGGATGCTAAATTTGATGCTTTCTTAAAGAATCGCTGCTGGAAGCTTATCTCATTACTCGTTGGCCGATTGGCTATAGGTAGCAAATGGGTTTTTAGACTCAAGTATAATGTTGATGGCAGTTTGCAGAAACATAAATCACGCAGCCACAAGGATATACAAGGGGAGAATCCTAATCTCGTGTTCACACTCACCAAGCCCCTATATGGGTTTAAGCAGGCACCACAAGCCTGGTCCTATAAGCTCTTTATAGCACTTCAAAATTTGGGGTTATCAGCCACCAAATCAGATGTGTCTGTCTTTGTGAAGCATGATCACTCCTCCATCACCTATGTTCTGATCTATGTGGATGATATcatgggtgatttgcattattttatgggtattcagACAAGGCATAATGGGTATCACAGGGGTGGAAACATGCCTCCACCCCCACCTCCATATCCAGTCCCCCTCTCCGTCCCGTCTCCGTCACGGATTGCAACCAATGACAAGCATGGAGAGAACTCGCCATATTTTGATGGGTGGAAAGCTTATGATAGAAACCCATTTCACCCAACAAAAAATCCTCAAGGTGTTATCCAGATGGGTCTTGCTGAAAATCAGCTTTGCTTCGATCTTATTGAAGAGTGGATAAGGAACAATTCCAAAGCTTCCATATGCACTGCTGAAGGAGTGCATCTGTTTAGAGATATTGCTAACTTTCAAGACTACCATGGATTGCCACAGTTCAGAAAAGGTGTGGCGAATTTCATGTCAAAAGCAAGGGGTGGTAGGGTCAAATATGATCCTGAGCGTATATTGATGAGTGGAGGAGCAACAGGTGCAAATGAATTAATAATGTTTTGTTTGGCTGATCCTGCTGATGCATTCATGGTTCCCACTCCTTATTATCCAGCATTCGTGCGTGATCTTGGTTGGAGAACTGGGGTGCAACTTGTTCCTGTTCATTGTGATAGTTCTAACAACTTCAAAATAACAAGAGAAGCCCTTGAAGAAGCTTATCGTGAAGCAAAACAAAACAACATCAATGTGAAGGGTTTGATCATAACAAACCCTTCAAACCCTTTGGGAACCACATTGGACAAAGAAACCCTCAAAAGTATTGTGAGGTTCATCAATGAGAAGAACATTCACTTGGTTTGTGATGAAATTTATGCCGCCACTGTTTTCACCACTCCAAGATTTGTGAGTATCTCTGAAGTCATGCTAGAAATGGAGTGCAAGAAAGAACTCATTCACATAATCTATAGTTTATCAAAGGATATGGGGTTACCGGGTTTTAGGGTTGGCATTGTTTATTCCTACAATGATGATGTTGTGAGTTGCGGCCGCAAAATGTCGAGTTTCGGATTAGTCTCTTCTCAGACTCAACATTTTCTAGCATCGTTACTTTCTGACGAGGATTTTATCGACAGATATTTAGAAATTAGCAAAAGGAGGCTCGCAAAGCGTCATAGTTTCTTCACAAAAGGGCTCGAAACGGTTAACATTACTTGCTTGCCAAGCAATTCAGGACTATTTTGTTGGATGAACTTGAGGAGGCTATTGAAGGAGAAAACTTTTGAAGGTGAAATGAAGCTTTGGCGTATGATCATCAATGAGGTGAAGCTCAATGTTTCACCGGGGTCAAGTTTCAATTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCTAACATGGATGATGAGACTGTGGAGGTTGCATTGAAAAGGATTAGGGCTTTTGTTGGGAGAGAAACTAATAATGGAAAAAGGGTTGAACTCAAACGTTGGAAAAGCATTAATACTAATAAGTTAAGGCTAAGCTTCAACTCTAGAAGGTTTGATGAGAATGTTATGTCACCTCATTCACCAATGCCTCACTCACCCCTTGTTCGTGCCACTTAA 1893 0.4089 MDAKFDAFLKNRCWKLISLLVGRLAIGSKWVFRLKYNVDGSLQKHKSRSHKDIQGENPNLVFTLTKPLYGFKQAPQAWSYKLFIALQNLGLSATKSDVSVFVKHDHSSITYVLIYVDDIMGDLHYFMGIQTRHNGYHRGGNMPPPPPPYPVPLSVPSPSRIATNDKHGENSPYFDGWKAYDRNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIRNNSKASICTAEGVHLFRDIANFQDYHGLPQFRKGVANFMSKARGGRVKYDPERILMSGGATGANELIMFCLADPADAFMVPTPYYPAFVRDLGWRTGVQLVPVHCDSSNNFKITREALEEAYREAKQNNINVKGLIITNPSNPLGTTLDKETLKSIVRFINEKNIHLVCDEIYAATVFTTPRFVSISEVMLEMECKKELIHIIYSLSKDMGLPGFRVGIVYSYNDDVVSCGRKMSSFGLVSSQTQHFLASLLSDEDFIDRYLEISKRRLAKRHSFFTKGLETVNITCLPSNSGLFCWMNLRRLLKEKTFEGEMKLWRMIINEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVEVALKRIRAFVGRETNNGKRVELKRWKSINTNKLRLSFNSRRFDENVMSPHSPMPHSPLVRAT 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02504 630 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 419 432 IPR004838 GO:0003824|GO:0009058|GO:0030170
Adu04g02504 630 Coils Coil 322 349 - -
Adu04g02504 630 Gene3D Aspartate Aminotransferase, domain 1 183 573 IPR015422 GO:0003824
Adu04g02504 630 CDD AAT_like 235 576 - -
Adu04g02504 630 Pfam Aminotransferase class I and II 195 574 IPR004839 GO:0009058|GO:0030170
Adu04g02504 630 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 159 595 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 445 468 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 379 402 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 287 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 413 437 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 343 367 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 230 246 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 289 310 - -
Adu04g02504 630 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 223 - -
Adu04g02504 630 SUPERFAMILY PLP-dependent transferases 163 579 IPR015424 -
Adu04g02504 630 Gene3D - 217 468 IPR015421 GO:0003824
Adu04g02504 630 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 159 595 - -
Adu04g02504 630 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 56 120 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02504 Adu-Chr4 111203393 111214410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g02504 54 120 Receptor kinase-like Gene Family AT4G23160 39.130 1.28e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g02504 K20772 - gmx:100775969 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02504 04 111203393 111214410 Adu04g02504 04 111203393 111214410 ECH
Adu04g02504 04 111203393 111214410 Adu02g00243 02 2721108 2725268 PCT