Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01558 ATGGAACGCAAGAAAACGCTGACGATGAATTGGGCCGGCCTCAGCGACGACAACGAGGACGAGCACTTCTTCGAGATCACTAACCGCCTCAACACGATTTGTCACCGTGACTTGGCTTCTTCCTCCGACGACGATGAGGAATTCGAAGACCCCCGCACATCGTTCTCCGCAACCATGTCTACCACACAATATCGAACATTCTCACGAATGTTTACAAGAACAGCCTCCATTCAACCCACCCCCAATTACGACATTTGGATGGCTGCACCAGGATCCATCACAGAAAGACGAAGAAGATTACTTGGAAGCATGGGATTGGATGAAAACAAAGTCTCATTAAAGGTCACCAGTTTCGCTCTTGATCGTGCTGTCACCAAGAAGCTCGATAAAATGAATAAGAAGGCTCCTATCCCTATTCCTGTTCCGCCTCGTTCTACAACAAGGGCCCCACGTTTGTTAGAAGAAGTGGCTGTTGGTTCCTCTCCTTCCCTTCCTTCCATTTCAGAAGAGCAAGAAACGAAGCATGCCCCTGTTTTGTTCTGCTTGGTGCGATCACGTTCCGAAGGGGATATTGAGATGATTTCCATGGCGAAAGCAAGGAAAGAGGAGTTCATTGGGAAGGTTTCGAAGCAGCGATTAACAAGAACCTCGTCGGAGATAGTAATGCCTCGTGCTAAGATGGTCCCCGCCGCAATGGTCCTGAAGGATCCTGCGGAGGTGAAGGCAAGGGTGGCCAATCATAACCGGAAGTCTTCGACGGCGGCGGGGGCAGGAGTGGGGGCTTTCTTTCTGATAAAGAATTTGGATACCGGGAAGGAATTTATTGTGAAGGAATATAGCGAAGACGGAATGTGGAATAAACTAAGTGATTTGCAGACGGGGAAGCAGTTAACGATGGATGAGTTTGAGAAAACTGTGGGGCATTCGAAAATTGTCAAGGAAATGATGAAGCGAGCCAAGGTGGGGAAGAAGGAAGGTATAGGAAAGATATTATCATCGAGTTCGATTTCAAAAAGTTTGAAATTAAGCAAGAAAAAGGGAGCTTCGTTCATAAAGAATGTGAAAGGTGCTGCAAGTAAAAGTTTTGGCGGGGAGAAGGAACTTAAAGAAGCTGGAGGAATTCTATCACAACCAGTGTCGGCAGAATCGAAAGCAACACAACAAGGGAAGAATGATTGGGTGAAAGTGCGACAAATTGGAAAGTCAGAGAAGGAGCTTTCGGCATTACATTTGTGTCAAGAGTTTCAAGCACATGAAGGAGGGATTTCGATCATAAAGTTTAGTTTGGATGGAAGGTTTTTGGCAAGCGGCGGAGAAGATAAAGTAATTCATGTGTGGGAAGTACAAGAATGCGGTCTTACGCCGTCTATACCAGGGCAAACAGAGGCTCCACCAGACAAGAAGAAAAGAGGGAAAGGGAGCTCAATTCCAGATTGGGTACAAGTCCCTGAGTTTGTTTTTAACCTTTCGGAGAAGCCATATTGCTCTTTTAACGGTCATTTGGATGAAGTCTTGGATTTGTCCTGGTCCAAATCATCAATCACTTTTTTTATTGTTGAACTCTGCCCACAGTTACTTCTATCCTCTTCGATGGACAAAACAGTGAGATTATGGGACCTAGAAACTAAAGCATGCTTGAAGTTCTTTGCACACAACGACTACGTAACTTGCATACAGTTCCATCCTATAGACGAAAATTATTATATTAGTGGCTGCCTTGATGCTAAGGTTAGAGTATGGAACATCCCTGCACGTCAGGTTGTGGATTGGACAGACATCGAAGAAATGGTTACTGCAATTACTTACACCCCGGATGGCCATGGTGCTATAGTTGGTACGATTAAAGGGGATTGCCGCACTTTCAAAGTACAAGATCACCAGTTAAGTGACCCAGGGACAATTAACTTCACACAGAAGAAGAAATCTCAGATTAAAAAGATTACTGGTTTCCAATTTGCCCCAAGGAACACATCAGAAATTCTTATTACTTCAGGCGATTCTAGGATAAGAATAGTGGACGGTTCAAAAGTCCTTCACAAGTTCAGAGGTTTTCGAAATGGAAATAGCCAAATTGCAGCTTCATTTAGTCCAAATGGAAGATACATAATCAGTGCAAGTGAGGATTCTCAAGTATTTGTTTGGAAATATGAAGAGCCTCGTAATGCAAACGCTGCAAAAGCTAAGACTATAACCGTGACCCAATCTTATGAACAGTTCCAATGTAAAGATGTAACAGTAGCAATACCATGGCCTTGTACAATTAAGAGTGATCCATCACAAGCGCCAGTGATTAACAACGCAAAAAAGAACACAAAACGCGGCGGGGATGATAATAAGAAAGCGTTGCCTCCTCTTCCAAAGAAAAACAATAACCACGGAAATAACGGAACTGATGGTAACGTAGCCTCGGCCGCACCGGATCACGACTCTTCAGCATATTCAAACGCAGAATCAGGCGTTGGAGATTCATCTAATAAAGTTGAGGCCACAGTAGAAGGTGATGGCACTTCTCAAGAAGAAGGTGAGGCAGTTTCTAGGGATAATTCAGGATTAGGTGATTCAGTTGCATCAAGTTCTGCACCAAATGGTCATGGCGATTCATCTGCTACAACTGCTGCTACTGCATCTTCAAATTTTTTGTTAAGTGATGTTAGCAACAATAACCCTGCTACAATGAATCCTTCAGCATGGGGCTTGGTGATTGTGACAGCTGGCTTTGAAGGTGAAATACGGTGTTACCAAAACTTTGGGTTGCCAAAAAAATTGGGGCTTCAAGCCAATCTTTTCGGAGGCCCTACATAA 2802 0.4408 MERKKTLTMNWAGLSDDNEDEHFFEITNRLNTICHRDLASSSDDDEEFEDPRTSFSATMSTTQYRTFSRMFTRTASIQPTPNYDIWMAAPGSITERRRRLLGSMGLDENKVSLKVTSFALDRAVTKKLDKMNKKAPIPIPVPPRSTTRAPRLLEEVAVGSSPSLPSISEEQETKHAPVLFCLVRSRSEGDIEMISMAKARKEEFIGKVSKQRLTRTSSEIVMPRAKMVPAAMVLKDPAEVKARVANHNRKSSTAAGAGVGAFFLIKNLDTGKEFIVKEYSEDGMWNKLSDLQTGKQLTMDEFEKTVGHSKIVKEMMKRAKVGKKEGIGKILSSSSISKSLKLSKKKGASFIKNVKGAASKSFGGEKELKEAGGILSQPVSAESKATQQGKNDWVKVRQIGKSEKELSALHLCQEFQAHEGGISIIKFSLDGRFLASGGEDKVIHVWEVQECGLTPSIPGQTEAPPDKKKRGKGSSIPDWVQVPEFVFNLSEKPYCSFNGHLDEVLDLSWSKSSITFFIVELCPQLLLSSSMDKTVRLWDLETKACLKFFAHNDYVTCIQFHPIDENYYISGCLDAKVRVWNIPARQVVDWTDIEEMVTAITYTPDGHGAIVGTIKGDCRTFKVQDHQLSDPGTINFTQKKKSQIKKITGFQFAPRNTSEILITSGDSRIRIVDGSKVLHKFRGFRNGNSQIAASFSPNGRYIISASEDSQVFVWKYEEPRNANAAKAKTITVTQSYEQFQCKDVTVAIPWPCTIKSDPSQAPVINNAKKNTKRGGDDNKKALPPLPKKNNNHGNNGTDGNVASAAPDHDSSAYSNAESGVGDSSNKVEATVEGDGTSQEEGEAVSRDNSGLGDSVASSSAPNGHGDSSATTAATASSNFLLSDVSNNNPATMNPSAWGLVIVTAGFEGEIRCYQNFGLPKKLGLQANLFGGPT 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01558 933 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Adu04g01558 933 MobiDBLite consensus disorder prediction 807 832 - -
Adu04g01558 933 MobiDBLite consensus disorder prediction 755 871 - -
Adu04g01558 933 PANTHER WD REPEAT DOMAIN 44 7 924 IPR040324 -
Adu04g01558 933 SUPERFAMILY WD40 repeat-like 409 720 IPR036322 GO:0005515
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Adu04g01558 933 Gene3D - 399 748 IPR015943 GO:0005515
Adu04g01558 933 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Adu04g01558 933 PRINTS G protein beta WD-40 repeat signature 568 582 IPR020472 -
Adu04g01558 933 PRINTS G protein beta WD-40 repeat signature 526 540 IPR020472 -
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 548 IPR001680 GO:0005515
Adu04g01558 933 Pfam WD domain, G-beta repeat 677 715 IPR001680 GO:0005515
Adu04g01558 933 Pfam WD domain, G-beta repeat 413 446 IPR001680 GO:0005515
Adu04g01558 933 Pfam WD domain, G-beta repeat 545 581 IPR001680 GO:0005515
Adu04g01558 933 Pfam WD domain, G-beta repeat 493 539 IPR001680 GO:0005515
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 582 IPR001680 GO:0005515
Adu04g01558 933 SMART WD40_4 583 622 IPR001680 GO:0005515
Adu04g01558 933 SMART WD40_4 542 581 IPR001680 GO:0005515
Adu04g01558 933 SMART WD40_4 674 715 IPR001680 GO:0005515
Adu04g01558 933 SMART WD40_4 490 539 IPR001680 GO:0005515
Adu04g01558 933 SMART WD40_4 637 673 IPR001680 GO:0005515
Adu04g01558 933 SMART WD40_4 408 447 IPR001680 GO:0005515
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 542 - -
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Adu04g01558 933 MobiDBLite consensus disorder prediction 850 871 - -
Adu04g01558 933 MobiDBLite consensus disorder prediction 456 475 - -
Adu04g01558 933 ProSitePatterns Trp-Asp (WD) repeats signature. 526 540 IPR019775 -
Adu04g01558 933 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 924 - -
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 582 - -
Adu04g01558 933 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 724 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01558 Adu-Chr4 67713349 67717879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01558 413 715 Miscellaneous Gene Families AT5G08390 23.003 1.93e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01558 K20241 - gmx:100793299 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01558 04 67713349 67717879 Adu04g01558 04 67713349 67717879 ECH
Adu04g01558 04 67713349 67717879 Adu02g01710 02 73519066 73525412 PCT