Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01272 ATGTCCATTGTTCCTTCTCATTTAACTCAGACTGATGTTTCCAGTATCAAGGGAGACTCTCGTATATTTTCAAATATGATGTTTTACTTCGTTAATGTGCCTCCATCTCATTCTCTTGAGAGCTTGCACAAAATGATTGCAGAGAATGGGGGAGTTTTCTCAATGAACTTGAATAACTCTGTCACTCATCGTGTGGCGGCAGAGAGCAAGGGGTTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCACTACAGTTGGATATTAGATTGCTGCTCACAAAAGAAGCTTGTCCCCTTACAGCCAAAGTACTTCCTCTTCCTATCTGAAGTAACAAGGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCTGACTCTTACTACATGTATATTGATCTTGGAGAGTTCAAACAGCTCTTAAACACTATTAATCGGTCAGAGGATATCAGTACTATTGATCATTACAGCAAAAAATACTGTCCAAAGGATGAGTGGTCTGTCTTTATTGGATGCTCCATATATTTCCACACTGCAATACCATCAGTGAAAGGGGACTGGAAAGTTCTATTGCAACTTGCTTTGAGAAGATTCAAGGTTGAAGTTCTCATGGGCGGTGGTAGAGTTACTGATAAACTTACTTGTGCAACCCATTTAGTTGTCTTGTCAGTTCCAGGATATGATGCCGAATTTGATGAGATACAGAGATGTTTTACTTCAGTGGATAGGAGGTTTCTCCAGAGCAAGAGGTTGCATATAATAAAATCCCATTGGTTTGAAGATTGTCTGGACAATAACAAAAGATTACCAGAAGAAAGTTACAGCTTGAGGCCCTCTGCAATAGAAGAGTCAACATCTGAAAATGGTGAAAATGACATCTTAGAGGCTCACTTTGGTGGAGACAATGTACAAGACCAGAATGTACCCTCTGAAAAGGAAAATAGACAGAGAAGTGCAAAAGCTGCTCATGAACACAGTTTGGCCACGGTGTCCCATGAGAATGTTGGCCCAAGGAAGAGAGGAAGACCTGCAGGGAGAGGTGTTAAAAATGTTAAGATGGCTGGCAACAAAGCCCAAAGAGCACGGCCACGCACTGTGAGAAAGCGTGCAAAAATAAGCGAGTATGAATCGGACAAAAGTGATTCTCATGACAATGAACCAGAAGAGCAGGAGGATGACACCGGAGAAGCAAGTTTTGATATTTACAATAGACATTTGGAACCTCAGGAGGTCGAGCAACAGGCCAATGTCCAAGTTGCTGAAACAGAAGAAAGTTCTGAACCAAACAGGGCAGTGCATGATTTGAGGAATAGTAGTGAGAGTGAAAGAATGTATGTTCCAGAAATAAAAATGGCAGATAGGACCAATGACCAAAACAGTGAATTGGCTAAAGAAATTGAAAATCGGGCTGATCCCATGTTATTTGACAAGATTCCGAGCCTTGCTACCGCCAAGAAAGTTGAGGACACTAAGCATTGTGATCTAAAAGAAGAGAGGCCAGCAGCAGCAGCAGAAAGCAGTAGCACCAATACTGCAGAACCTACAATCACTAAGAAAAAGAAAGTTAGCTACAAGGACGTTGCCAATGACCTGCTCAAAGATTGGTAG 1608 0.4129 MSIVPSHLTQTDVSSIKGDSRIFSNMMFYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHRVAAESKGFKFEAAKRHGDIIHYSWILDCCSQKKLVPLQPKYFLFLSEVTRKKLQEEIDEFSDSYYMYIDLGEFKQLLNTINRSEDISTIDHYSKKYCPKDEWSVFIGCSIYFHTAIPSVKGDWKVLLQLALRRFKVEVLMGGGRVTDKLTCATHLVVLSVPGYDAEFDEIQRCFTSVDRRFLQSKRLHIIKSHWFEDCLDNNKRLPEESYSLRPSAIEESTSENGENDILEAHFGGDNVQDQNVPSEKENRQRSAKAAHEHSLATVSHENVGPRKRGRPAGRGVKNVKMAGNKAQRARPRTVRKRAKISEYESDKSDSHDNEPEEQEDDTGEASFDIYNRHLEPQEVEQQANVQVAETEESSEPNRAVHDLRNSSESERMYVPEIKMADRTNDQNSELAKEIENRADPMLFDKIPSLATAKKVEDTKHCDLKEERPAAAAESSSTNTAEPTITKKKKVSYKDVANDLLKDW 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01272 535 SUPERFAMILY BRCT domain 158 279 IPR036420 -
Adu04g01272 535 MobiDBLite consensus disorder prediction 503 517 - -
Adu04g01272 535 PANTHER DNA LIGASE 4 4 276 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Adu04g01272 535 MobiDBLite consensus disorder prediction 274 458 - -
Adu04g01272 535 MobiDBLite consensus disorder prediction 495 517 - -
Adu04g01272 535 PANTHER DNA LIGASE 4 4 276 - -
Adu04g01272 535 MobiDBLite consensus disorder prediction 409 425 - -
Adu04g01272 535 CDD BRCT_DNA_ligase_IV_rpt1 22 108 - -
Adu04g01272 535 MobiDBLite consensus disorder prediction 308 322 - -
Adu04g01272 535 ProSiteProfiles BRCT domain profile. 18 106 IPR001357 -
Adu04g01272 535 MobiDBLite consensus disorder prediction 426 458 - -
Adu04g01272 535 SMART BRCT_7 173 266 IPR001357 -
Adu04g01272 535 SMART BRCT_7 20 96 IPR001357 -
Adu04g01272 535 MobiDBLite consensus disorder prediction 368 384 - -
Adu04g01272 535 Gene3D BRCT domain 32 146 IPR036420 -
Adu04g01272 535 SUPERFAMILY BRCT domain 19 107 IPR036420 -
Adu04g01272 535 Pfam BRCT domain, a BRCA1 C-terminus domain 20 103 IPR001357 -
Adu04g01272 535 Gene3D BRCT domain 164 276 IPR036420 -
Adu04g01272 535 ProSiteProfiles BRCT domain profile. 206 276 IPR001357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01272 K10777 - gmx:100816002 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01272 04 29812481 29816816 Adu04g01272 04 29812481 29816816 ECH