Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g01233 ATGAACATGTTCTACACAAGAAGACCATTCTCCTCCTCTTCTTCTTCTTGCTCCTCAAAGAACCATTCACTCCAAACGTTACTGAAGCGTGGATTCACACCAACCCTGAAATCCATCAACATATTCCTCCTCTCCCTCCTCCGCCACCGCAAGTTCAACCTCATCATCCACCTCTTCACCTCTGCCACACTCATCCCCACTAACCCTACCACCCACTCCATCCTCACATGGGCACTCCTCCATTCTAGAAGCTTCCAAGATGCCGAGAATCTCATCTTAACTCACTTCACCCATTCCCATCCTCGCATCTGGGACACACTCATCCGTACCCACCATGACCCTGAAAGGGCACTCTTTCTTCTACGCTATTGCCTCCAAAACGGTGCCGTTTTGCCCTCTCCTCTCACTTTCTCTTCTCTTATTCACAGGCTCTCTTCTCAGGGGGACCTAGGCATGGCAATGGAGGCGCTGGAGATCATGACAGATCATAGGGTAAGGTACCCTTTTGATGATTTTGTTTGTAGCTCCGTGATTTCTGGGTTTTGTAGGATTGGGAAGCCTGAACTTGCGTTAGGGTTTTATGACAATGCTGTGGGTTCTGGGGCACTGTTGAGGCCCGGCTTGGTTACTTTAACTGCAATTGTTGGTGCACTTGTTAGGTTGGGGAGGCTTGATGAGGTTTGTGGTTTGGTTAGGAGGATGGAGGAGGATGGGATTGGTTTGGATGTTGTTTTGTATAGTGTTTGGGTTTGTGGGTATGTTAAAGGGAATGACTTGGTGGAGGTTTTTCGAAAGATGAGGGAAATGGTGGTGGTGAAGGGTATCGATCATGATCATGTGAGTTATACTATACTCATTGATGGGTTTTCTAAGTTAGGCGATGTGGAGAAGTCATTTGGGATCTTGGCTAAGATGATAAAGGAAGGGAAGAGACCCAATAAGGTCACTTACACTGCAATAATATCTGCTTATTGTAAGAAGGGTAAAGTTGAGGAAGCACGTGGTGTTTTTGACAGGATAGGTGAGTTGGGAATTGAGTTGGATGAGTTTGTGTATGCAGTTTTGATTGATGGATATTGTTGGATTGGAGATTTTGGTAGTGTCTTTAAGCTATTTGTTGAAATGGAGAAAAGAGGGGTTAGTCCTAGTGTTGTTACGTATAATACCATAATAAATGGTTTGTGCAAGTTCGGGAGGACGTCTGAGGCGGATGAGTTATCAAAAGATGTGGCTGCAGATGTGATTACGTACAGCACGTTGTTGCACGGTTATACCGAAGAAGAGAACACTCCGGGGATTTTGCAGACAAAGAGGCGACTAGAAGAAGCTGGAATCGCCATGGATATCATAATGTGGCCGGAAATGGGTCTGGTTCCGAATTCCGTTACTTATTGCACAATGATTGATCAGTATTGCAAGGTAGGTAGAATTGACGAGGCACTTGTGGTATTTGACGACTTCAGAAAAACATCATTCTCTTCACCTGTATGCTACACTAGTATTATTCATGGCCTCTGCAAGAAGGGTATGGTAGAAATGGCCATTGAGGCATTAGTCGAACTCAATGATAAAGGACTGGAGTTAAGTAGATATACATTTAGGATGTTAATGAGGACAATTCTCACTGAAAAGGGTGCAAAAGAGGTTTTAGATTTAGTTTACACAATGGAAGGATTGGGCCAAGACTTATATGAGTCAGTATGTAATGATGCGATCTTTTTATTATGCAGAAGAGGATTTCTTGAGGATGCATATCGCTTGTGCTTGATGATGAGAAAGACAGGTTTATACGTTACAAGAAATTCTTATTATTCTGTTTTGAGAAGCTATCTTAGTAACAGGAATAGGGAGCACATGCTGCCCCTATTGAATATCTTTCTAAAAGAATATGGCCTAGTTGATCCAATGATGCGAAGGATACTAGCATGCTACCTATGTTTAAAAGATATCCATAGTCCCCTTCAATTTATGGGAAAAACAATCTCTCTTCCTGTCTCCATCCTCAGGATTCTGATAAAGGAAGGTAGAGCTTTAGATGCATATAAGCTTGTGGTAAAGACTCAAGATAGTTTACAAGTCATGTATGCTGATTATGCCATTCTGATTGATGCCTTATGCAAGGGAGGATATCTCAATAAAGCATTGGATCTTTGTGCCTTCGTTGAAAAGAAAGGGATCACTTTGGACATAGTTGTATATAATTCTATAATAAATGGATTGTGCCATGAGGGACGTCTTATTGAAGCATTTCGGCTATTTGATTCATTGGAGAAACTTAATTTGATACCATCTGAAATAACTTATGCCACATTAATTTATGCACTAAGTAGGGAGGGATATCTGGTAGATGCCGAGCATGTTTTCAGTAAAATGGTTCTGAAGGGCTTTCAACCAAAAACACAAGTTTATAATTCACTACTTGAGGGTATTTCAAAGTTTGGTCAATTAGAGAATGCGCTCGAGCTTCTAAACGATATGGAGACAAAATATATTGAGCCTGACAGCTTGACGGTTAGTGCTGTCATAAATTGCCATTGCCAAAAGGGCAACATGGAAGGAGCACTTCAATTCTATTATAAGTTCAAGAGGAAGGATGTATCACCTGATTTTTTTGGGTTCTTGTACTTGATAAGAGGATTATGTTCAAAGGGACGGATGGAAGAAGCTAGGAGTGTCTTGAGAGAAATGCTCAAATCGAAGAATATTGAAGAGATAATTAACATAGTTAACAATGAGGTTGATAATGAGTCAATAGGTGGCTTTCTTGCCATTTTGTGTGAGCAAGGAAGTATTCAAGAAGCCCTTGCAGTTCTCAATGAAATTGCAAGCACGCTTTATCCTGTTCTAAGGTTATCTACATATAATCAAGGAGCTCATGCACAGAGGAACATTTCTGAGCTGAACGCTGGTTTACAATCTTCAAGGCGTCTATCCTCCTCTTGTAGAACTGGTTTGGATTTTGGATCTTGTGATGGTAGCGATGAAAGTGATCTTACAATAAATAATGATAGTCATGTGACAAGGTCCCGGCCACTCAATTTCGACTTCTATTATTCCGTGATTGCCACACATTGTGCCAAAGGGGAGCTACAGAAAGCTAATCAAGTAGCCAAGGGAATGCTTTCCCACCTAAGAGAGATCACACAGTTGACATCTGCAGCATCAACCAGATAA 3174 0.4156 MNMFYTRRPFSSSSSSCSSKNHSLQTLLKRGFTPTLKSINIFLLSLLRHRKFNLIIHLFTSATLIPTNPTTHSILTWALLHSRSFQDAENLILTHFTHSHPRIWDTLIRTHHDPERALFLLRYCLQNGAVLPSPLTFSSLIHRLSSQGDLGMAMEALEIMTDHRVRYPFDDFVCSSVISGFCRIGKPELALGFYDNAVGSGALLRPGLVTLTAIVGALVRLGRLDEVCGLVRRMEEDGIGLDVVLYSVWVCGYVKGNDLVEVFRKMREMVVVKGIDHDHVSYTILIDGFSKLGDVEKSFGILAKMIKEGKRPNKVTYTAIISAYCKKGKVEEARGVFDRIGELGIELDEFVYAVLIDGYCWIGDFGSVFKLFVEMEKRGVSPSVVTYNTIINGLCKFGRTSEADELSKDVAADVITYSTLLHGYTEEENTPGILQTKRRLEEAGIAMDIIMWPEMGLVPNSVTYCTMIDQYCKVGRIDEALVVFDDFRKTSFSSPVCYTSIIHGLCKKGMVEMAIEALVELNDKGLELSRYTFRMLMRTILTEKGAKEVLDLVYTMEGLGQDLYESVCNDAIFLLCRRGFLEDAYRLCLMMRKTGLYVTRNSYYSVLRSYLSNRNREHMLPLLNIFLKEYGLVDPMMRRILACYLCLKDIHSPLQFMGKTISLPVSILRILIKEGRALDAYKLVVKTQDSLQVMYADYAILIDALCKGGYLNKALDLCAFVEKKGITLDIVVYNSIINGLCHEGRLIEAFRLFDSLEKLNLIPSEITYATLIYALSREGYLVDAEHVFSKMVLKGFQPKTQVYNSLLEGISKFGQLENALELLNDMETKYIEPDSLTVSAVINCHCQKGNMEGALQFYYKFKRKDVSPDFFGFLYLIRGLCSKGRMEEARSVLREMLKSKNIEEIINIVNNEVDNESIGGFLAILCEQGSIQEALAVLNEIASTLYPVLRLSTYNQGAHAQRNISELNAGLQSSRRLSSSCRTGLDFGSCDGSDESDLTINNDSHVTRSRPLNFDFYYSVIATHCAKGELQKANQVAKGMLSHLREITQLTSAASTR 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 869 899 IPR002885 -
Adu04g01233 1057 PANTHER ATPASE EXPRESSION PROTEIN 3 723 1045 - -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 834 868 IPR002885 -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Adu04g01233 1057 PANTHER FERTILITY RESTORER-LIKE 62 416 - -
Adu04g01233 1057 PANTHER FERTILITY RESTORER-LIKE 723 1045 - -
Adu04g01233 1057 PANTHER ATPASE EXPRESSION PROTEIN 3 453 541 - -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 764 798 IPR002885 -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 136 163 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 698 726 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 209 239 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 173 196 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat family 729 776 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat family 798 847 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat family 348 396 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat family 496 538 IPR002885 -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 799 833 IPR002885 -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 104 203 IPR011990 GO:0005515
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 438 547 IPR011990 GO:0005515
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 659 777 IPR011990 GO:0005515
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 343 437 IPR011990 GO:0005515
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Adu04g01233 1057 PANTHER FERTILITY RESTORER-LIKE 666 726 - -
Adu04g01233 1057 PANTHER ATPASE EXPRESSION PROTEIN 3 62 416 - -
Adu04g01233 1057 PANTHER ATPASE EXPRESSION PROTEIN 3 666 726 - -
Adu04g01233 1057 PANTHER FERTILITY RESTORER-LIKE 453 541 - -
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 413 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 766 798 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 837 869 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 876 900 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 462 492 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 351 384 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 315 349 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 385 406 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 731 764 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 802 834 IPR002885 -
Adu04g01233 1057 TIGRFAM PPR: pentatricopeptide repeat domain 496 528 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 865 896 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 309 339 IPR002885 -
Adu04g01233 1057 Pfam PPR repeat 455 485 IPR002885 -
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 548 649 IPR011990 GO:0005515
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 224 342 IPR011990 GO:0005515
Adu04g01233 1057 Gene3D Tetratricopeptide repeat domain 778 989 IPR011990 GO:0005515
Adu04g01233 1057 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g01233 Adu-Chr4 28240395 28243886 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g01233 569 939 Glycosyltransferase AT1G05670 25.936 4.92e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g01233 - K17964 gmx:100783405 1382.08