Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00983 ATGATCAAGTTAACACATTTACTCACTGTCACTAACAAGCTTCCTCATTCTTCCGAATCATGCTATTCGATTTGGAACCCTAATCGTTCCTTGTCTCTCTCTTCCCCTTTCCATTCCCATTGCTATTCTCTCACAGATCACAGGGTACTCCACAGGGTTCTTGAACAATGCAGAGTTTCCAGGGATTCCAAAACTGCAGCAAAAACCCATGCAAGGGTTGTAGTACTTGGGTATGCTACGTACCCATCACTTGTTTCTTCTCTGGTTTCAACCTATGCTAACTGTCACCTACCCCACATTGCAAATCACGTTGTTCATCATGCTTTCACCCATGTTTCGAACCTATTCAACATGAACTTGATACTTGAAAGGTTGATGAAAGTTGGGCAATGCGATGTTGCCAAGAAGGTGTTTGTTAAAATGCCTGTTCGAGATGTTGTTTCTTGGAACACCATGATTGGAGGGTACGTGAAGAACTCGCGGGTTGTTGATGCACTGAGCATTTTCAGGGGGATGCTGAATGCTAAAGTTGAGCCCGACGGGTTCACATTTGCTTCTGTGGTTACTGCGTGCGCACGCCTTGGGGCTCTTGCTAATGCCAAGTGGGTGCATACTTTGATGGTGGAGAAGAGGATTGAGCTGAACTATATACTGAGTGCTGCATTGATTGACATGTATGCTAAGTGTGGTAGAATTGATGTTTCGAAATGTGTTTTTGAAGATGGTGTGCGCGATCATGTGTCGGTTTGGAATGCTATGATTAATGGGTTGGCAATTCACGGGCTTGCTTTGGATGCAGCTGCAGTGTTTTCTAGGATGGAGATGGAAAATGTTTCGCCTGATAGTGTTACTTTTATTGGGATTCTGATAGCTTGTAGCCATTGTGGATTGGTTGAAGAAGGTCGTAAGTACTTTGATATGATGCAGAACCAATTTTTAATTCAGCCACAACTTGAGCATTATGGTACCATGGTTGATCTGTTAGGACGATCAGGGCTTTTGGATGACGCGTATGACATGATTAAAGCTATGCCAATTGAGCCCGATGTTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAAACCATAGAAAGAAAGAACTTGGTGAAGTTGCAATTGCCAATATATCACGTCTTGAGAGTGGTGATTTCGTCCTGCTATCGAATATGTATTGCTCTTTAAAGAACTGGGATAGTGCTGAGAGGGTGAGACAGATGATGAAAAAGGGAGGAGTTCATAAAAAACAGGGTAAGAGTTGGATTGAATTGGGGGGCAGCATTCACCAATTCAAGGCAGCCAATCACTCGCATGCTGAAATGAAAGCAATTTACAGAGTGTTGGAAGGACTGAACCAAAGGGCTAAGCTGGAAGGCTTTGCTCCCATGACAGAGTTGGTTTTGATGGATGTTTCCGAAGAGGAAAAAGAGGAAAATTTAAACTTTCATAGTGAGAAGTTGGCCTTGGTCTATGCCGTGTTGAAAACTAGCCCTGGAACTAAAATCAGAATTTTCAAGAATCTTCGTATCTGTCAAGACTGTCATAATTGGATAAAAATTGTGTCCAGAATATTAAACAGAGAAATAATCGTGAGGGATCGCATCCGTTTTCACCAATTTGAAGGTGGTTTTTGCTCTTGCAGAGACTACTGCTATGGTTGCAAGCAAGGGTGGTCAAGTGGAAAACCTGAGGATTTCAAGTTGGCATTTTTTGAACTTGCCCATGTTAACAATGCATCACTTGGCGCACAGCCTCCTCCGTTATCTCCAACGCCAACAACGACTGAATCTCCAAGACCTCTCCTCCTCGCTTCTTCGTCGCGCTACCAACTCCTTCTCCTCCCCGACTCAGTCATGGTGGCTTCGGCAGCTTCTTATTGGACACGCCTGAAATCCATTGCTCACATTCCAAGTGCCCACATCCTTATGCTCAACAGTGGGATTCACTTCCATAGCATAGAAATTAGTGAAGCTATTGACCAAATTTGA 1986 0.435 MIKLTHLLTVTNKLPHSSESCYSIWNPNRSLSLSSPFHSHCYSLTDHRVLHRVLEQCRVSRDSKTAAKTHARVVVLGYATYPSLVSSLVSTYANCHLPHIANHVVHHAFTHVSNLFNMNLILERLMKVGQCDVAKKVFVKMPVRDVVSWNTMIGGYVKNSRVVDALSIFRGMLNAKVEPDGFTFASVVTACARLGALANAKWVHTLMVEKRIELNYILSAALIDMYAKCGRIDVSKCVFEDGVRDHVSVWNAMINGLAIHGLALDAAAVFSRMEMENVSPDSVTFIGILIACSHCGLVEEGRKYFDMMQNQFLIQPQLEHYGTMVDLLGRSGLLDDAYDMIKAMPIEPDVVIWRALLSACRNHRKKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRQMMKKGGVHKKQGKSWIELGGSIHQFKAANHSHAEMKAIYRVLEGLNQRAKLEGFAPMTELVLMDVSEEEKEENLNFHSEKLALVYAVLKTSPGTKIRIFKNLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGFCSCRDYCYGCKQGWSSGKPEDFKLAFFELAHVNNASLGAQPPPLSPTPTTTESPRPLLLASSSRYQLLLLPDSVMVASAASYWTRLKSIAHIPSAHILMLNSGIHFHSIEISEAIDQI 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00983 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Adu04g00983 661 Gene3D Tetratricopeptide repeat domain 263 452 IPR011990 GO:0005515
Adu04g00983 661 Pfam PPR repeat family 144 193 IPR002885 -
Adu04g00983 661 Pfam E motif 363 422 IPR046848 -
Adu04g00983 661 TIGRFAM PPR: pentatricopeptide repeat domain 147 180 IPR002885 -
Adu04g00983 661 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Adu04g00983 661 Pfam PPR repeat 320 344 IPR002885 -
Adu04g00983 661 Pfam PPR repeat 249 277 IPR002885 -
Adu04g00983 661 Pfam PPR repeat 283 309 IPR002885 -
Adu04g00983 661 Pfam DYW family of nucleic acid deaminases 458 549 IPR032867 GO:0008270
Adu04g00983 661 Gene3D Tetratricopeptide repeat domain 98 236 IPR011990 GO:0005515
Adu04g00983 661 PANTHER OS07G0578800 PROTEIN-RELATED 28 496 IPR045215 GO:0003723|GO:0009451
Adu04g00983 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Adu04g00983 661 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00983 Adu-Chr4 16976705 16979894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00983 86 549 Glycoside Hydrolase AT3G49170 36.998 1.93e-100 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00983 - - lang:109344997 862.448