Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00939 ATGTGCTTTGAAATAAGGAAGCAGAAATATCTCGAAGCCTTGGACAGTAAGGAGAAGACAAGGGCTCTTGAAATACTGGGGAAGGATTTGAAAGTGTTCCAAACATACAATGAAGAATTATACAGAGAAATCACATATCTGTTAACCCTTGAAAACTTTAGGGATAATGAACAGTTATCAAAATATGGGGATACCAAAACAGCTAGGAAAACAATGATAGTAGAGCTTAAGAAACTGATTGAAGCAAATCCCCGTTTGAATGACAAGCTTGTATTTCCTTCATTGAAGCCATCAAGGTTACGAACACTTATTAATCAGAGTCTGAATTGGCAGCATCAGCTCTGCAAGAACCCAAAGCCAAATCCGGACATAAGGACTCTGTTCGTTGACCACACATGCTCTCCTCCCGGTCCGGCCGGTGCAAGCTCAAGCACGCCAAGGTCACCATCAGTCCCGGCAGCTGTTAATCCTTCTGCGGTTGCGGCTGCGACTGGGGCCGGGACGTCTGTTCCCCTGAACCAAACCTTAGTGTCTGCATTGAAGCATTCCAGGACACCACCTACTCCTATGAATAACGAGCAGCGAGGAAAACGGTTGCGATCTGTTCCACAAGCAACCGAGGCGACGAATTCTCTGGTGGTCCGTCAACAAGTCCCTCGGTCTCTTGACGACCTTACTAGAACGCTGTTTTGTACATTGAATCAAGGATCAACAGTTACAAGCATGGATTTTCATCCTTCTCTTCATTCCTCACTTCTTATCGGAACTGCAAGTGGTGAAATTTCATTCTGGGAAGTAGGACGCAATGAGAGGCCAATCTTAAAGCCTTTTGCCATTTGGAACAGTGCTACTTGCTCGGTCTTATTTCAGGTTGATGCTCATGTTGGCAGTGTCAATGATTTGGCGTTTTCTTCCCCACACAAACAGCTATGCATGGTAACTTGCGGGGATGATAAGCTCATAAAGGTGTGGGACTTAACCGGACACAACCTGTTTAACTTCCAAGGTCACGAAGCAGCGGTTTATTCTATTTGTATGAATGTGAAGGAAAACGTTGAGTACATATTGTCAAGTAGTGTTGATGGAAAAATAAAGGCGTGGTTGTTTGATAACTCGGACACAAAAGTGGAATATGATGCCCATGGAAAATACTGCACCACAATGCTCTATAGCGCCGATGGAACTAAATTGTTTTGTTGCGGGACAAGTAAAAACAATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAATGATGGAGTTATAAAGAGAACCTATGCTGGATTAGGAAAGAAATCGATGGGCATGATGCAATTCGACACGACCAAGAATCGCTTCTTGGTTGCCGGCGAAGACAAGCTGATAAAGTTCTGGGAGCTGGACAACCCTAATATTCTAGCTAGTGTACAAGTTGATGGCAATTTATCTAGTGTTCCCCGGGTGAGGTTTAATAGGATAGGGAGTCTGCTTGCTGTAACCACCGCAGATGGCAGGGTAAAGATTTTTGCTAACGCCGACGGCATCAAGCACTTAAGGGCCATTCAAGCTTGGTCTTGCCGGGCTTCGTCCAAAGCGAATACCAATCCAGCCATGACTCATTTGGAACTCGGAGAGGGTAGCTCTGCTCGTAGATCTAAATCTTTTACGGAATTACCAGAAATACTTAAGTGTCAAATGATTACTCTGCCCGATACCATGTATCCCACAGCCAAGGTTGCTCGACTTGTCTACATGAATAACGGAGTTGGCCTTCTCGGTGTTGGTTCCGATGGGACTCAGAAGCTGTGGCGATGGAATCGAACTGAATTGAATCCTACTGGAAAGGCGATGGCAAGTGCTTGTCCAGTGCTTTGGCGACCAAATTCCGGTTTTGTCATGACAAACGATGTTCCAGAAAATTCAGAAGGCACAATTCCTTGTGCAATCATCTCAAAGAACGATTCTTATGTTTTGTCAGCATGCGGAGGAAAACTTACACTTTTCAACATGCTCTCATTTAAGGTAATGGTGAGTTTCATGTCGCCACCACCTCGTTCAACTTGCCTTGCATTTCACCCTCAAGATAATAACGTTGTTGCAATTGGAAAGGAAGATTCCTCCATCCATATTTACAACATTCAGTCGGAAGAGGTCAAAGCTAAATTGACTGGTGATGAGAAGTGCATCACTAGTTTAGCTTTTTCAATGCTGCTGGCTGTCTTAGTTTCATCAGATGCCGATGCTCAGATCTTCTTTTGGAGCATTGACACATGGAATTTGAAGAAATCATTGAAAATGTATTTGCGCGACGAAAGTCCAGTAAATGGCGATACTCAAGTGCAATTTCACTGTAATCAGATAAACTTGCTGGTATGCCACCGCGAGGTGCTAAGTCTATATGATGCATCAAGAATGGAACTGGTTATGCAGTGGGTTCCAAAGGCTCATATGTCTGGTTCCATATCATGTGCTACATACTCGGGCAATGGCAAATTGATCTATACTGCTCTTACCGATGGCAACATTGTAATATTTAATGCTGACACCTTGATGCTGCGATGTCGTATCGCTCCATCTGTTTACCTCATGACCCCAAACTTACCAAATAGCGAAAATGTGTATGCGGCTGTACTTGCAGCAAATCCACAGGAGCCGAATCAATTTGCAGTTGGACTGTCCAATGGAGCTATTAAGGTCATTGAGCCCCAAGCTTCTCGTCGAGGAAATAATGGTAGCTGGATGGGAAAATTTAAACGCGCGGGAAAACCGCCGCGCCACGGTGGCCGAGCATGCAGCAGTGCCATGGAGGAGACAGTGTCTGATGATGGAAACAGTGGTGCAAATACAATATAA 2829 0.444 MCFEIRKQKYLEALDSKEKTRALEILGKDLKVFQTYNEELYREITYLLTLENFRDNEQLSKYGDTKTARKTMIVELKKLIEANPRLNDKLVFPSLKPSRLRTLINQSLNWQHQLCKNPKPNPDIRTLFVDHTCSPPGPAGASSSTPRSPSVPAAVNPSAVAAATGAGTSVPLNQTLVSALKHSRTPPTPMNNEQRGKRLRSVPQATEATNSLVVRQQVPRSLDDLTRTLFCTLNQGSTVTSMDFHPSLHSSLLIGTASGEISFWEVGRNERPILKPFAIWNSATCSVLFQVDAHVGSVNDLAFSSPHKQLCMVTCGDDKLIKVWDLTGHNLFNFQGHEAAVYSICMNVKENVEYILSSSVDGKIKAWLFDNSDTKVEYDAHGKYCTTMLYSADGTKLFCCGTSKNNGDSFLVEWNENDGVIKRTYAGLGKKSMGMMQFDTTKNRFLVAGEDKLIKFWELDNPNILASVQVDGNLSSVPRVRFNRIGSLLAVTTADGRVKIFANADGIKHLRAIQAWSCRASSKANTNPAMTHLELGEGSSARRSKSFTELPEILKCQMITLPDTMYPTAKVARLVYMNNGVGLLGVGSDGTQKLWRWNRTELNPTGKAMASACPVLWRPNSGFVMTNDVPENSEGTIPCAIISKNDSYVLSACGGKLTLFNMLSFKVMVSFMSPPPRSTCLAFHPQDNNVVAIGKEDSSIHIYNIQSEEVKAKLTGDEKCITSLAFSMLLAVLVSSDADAQIFFWSIDTWNLKKSLKMYLRDESPVNGDTQVQFHCNQINLLVCHREVLSLYDASRMELVMQWVPKAHMSGSISCATYSGNGKLIYTALTDGNIVIFNADTLMLRCRIAPSVYLMTPNLPNSENVYAAVLAANPQEPNQFAVGLSNGAIKVIEPQASRRGNNGSWMGKFKRAGKPPRHGGRACSSAMEETVSDDGNSGANTI 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00939 942 SUPERFAMILY WD40 repeat-like 771 895 IPR036322 GO:0005515
Adu04g00939 942 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 280 751 IPR011047 -
Adu04g00939 942 Gene3D - 566 855 IPR015943 GO:0005515
Adu04g00939 942 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 163 291 IPR027728 GO:0006355
Adu04g00939 942 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 290 522 IPR027728 GO:0006355
Adu04g00939 942 MobiDBLite consensus disorder prediction 182 201 - -
Adu04g00939 942 Gene3D - 154 422 IPR015943 GO:0005515
Adu04g00939 942 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Adu04g00939 942 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 290 522 - -
Adu04g00939 942 Gene3D - 430 551 IPR015943 GO:0005515
Adu04g00939 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 714 755 IPR001680 GO:0005515
Adu04g00939 942 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 537 899 - -
Adu04g00939 942 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 163 291 - -
Adu04g00939 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 367 IPR001680 GO:0005515
Adu04g00939 942 MobiDBLite consensus disorder prediction 899 942 - -
Adu04g00939 942 SMART WD40_4 461 502 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 327 368 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 418 458 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 796 838 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 664 704 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 226 265 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 284 325 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 707 746 IPR001680 GO:0005515
Adu04g00939 942 SMART WD40_4 371 415 IPR001680 GO:0005515
Adu04g00939 942 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 163 IPR027728 GO:0006355
Adu04g00939 942 Pfam WD domain, G-beta repeat 290 325 IPR001680 GO:0005515
Adu04g00939 942 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 163 - -
Adu04g00939 942 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 537 899 IPR027728 GO:0006355
Adu04g00939 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00939 Adu-Chr4 15327386 15337690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00939 293 501 Miscellaneous Gene Families AT5G08390 24.057 6.79e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00939 - - ahf:112741705 1768.44