Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu04g00867 | ATGTCTTCTTCTTCTTCTCGATTCAATGGCAAGATGGGTGGCTTGAAGTTTTGCACCAAATGCAATAACATTCTGTACCCTAAGGAAGACAAGGAGTTAAAGATTCTCATGTACGCTTGCCGCAATTGCGATCACGAGGAGATTGCTCATAGCAACATTGTGTATAGAACAAAGATACATCATTCTACTGCAGAGAATACTCAGGCTACTGAGAATCTAGCTGCAGACCCAACTCTTCCACGCACCAAGGCGGCTCGCTGCAGTCAATGCAACCATGGAGAAGCTGTGTTCTTTCAGGGAACAGCCAGAGGTGAAGAAGAAATGTGTCTTTTTTTCGTTTGCTGCAACCCGAATTGCAGTCACCGATGGAGAGACTGA | 378 | 0.4524 | MSSSSSRFNGKMGGLKFCTKCNNILYPKEDKELKILMYACRNCDHEEIAHSNIVYRTKIHHSTAENTQATENLAADPTLPRTKAARCSQCNHGEAVFFQGTARGEEEMCLFFVCCNPNCSHRWRD | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu04g00867 | 125 | PANTHER | DNA-DIRECTED RNA POLYMERASE SUBUNIT | 12 | 125 | - | - | |
| Adu04g00867 | 125 | SMART | rpol9cneu | 16 | 69 | IPR001529 | GO:0006351 | |
| Adu04g00867 | 125 | SUPERFAMILY | Zinc beta-ribbon | 14 | 59 | - | - | |
| Adu04g00867 | 125 | SMART | Cys4_2 | 85 | 125 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Adu04g00867 | 125 | ProSitePatterns | RNA polymerases M / 15 Kd subunits signature. | 17 | 43 | IPR019761 | - | |
| Adu04g00867 | 125 | CDD | Zn-ribbon_RPB9 | 75 | 124 | IPR034012 | GO:0006379 | |
| Adu04g00867 | 125 | Pfam | Transcription factor S-II (TFIIS) | 86 | 124 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Adu04g00867 | 125 | PANTHER | DNA-DIRECTED RNA POLYMERASE | 12 | 125 | IPR012164 | GO:0006351 | |
| Adu04g00867 | 125 | Pfam | RNA polymerases M/15 Kd subunit | 15 | 47 | IPR001529 | GO:0006351 | |
| Adu04g00867 | 125 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 83 | 124 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Adu04g00867 | 125 | Gene3D | - | 58 | 125 | - | - | |
| Adu04g00867 | 125 | SUPERFAMILY | Zinc beta-ribbon | 64 | 125 | - | - | |
| Adu04g00867 | 125 | Gene3D | - | 12 | 57 | - | - | |
| Adu04g00867 | 125 | PIRSF | RNApol_RpoM | 15 | 125 | IPR012164 | GO:0006351 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu04g00867 | Adu-Chr4 | 13476621 | 13478323 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu04g00867 | K03017 | - | nnu:104605091 | 197.593 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Adu04g00867 | 04 | 13476621 | 13478323 | Adu04g00867 | 04 | 13476621 | 13478323 | ECH | |
| Adu01g02571 | 01 | 94969321 | 94972040 | Adu04g00867 | 04 | 13476621 | 13478323 | PCT |