Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g00838 ATGTGCCTGGAACTGAGAGAATTGACGCATGAAAGCGCGAAGCCACCTACGCAACAACGCTTGCTCCCCCCAACTAACCCCATCCTCACTTGTCACGTGACACACACCCTCCCCCTTCTCCCTCACTATATAAACCCCCTCTCTCTTCTCTCCCCCGGCTTTCATTTCCAATTTCCCAACTCGCTCTCTCTTCCACTCACCTCCTCACCCGAGTCAACAAGATCTATCTATTTATTCATCATGGCAACTGGGCAACTATTCTCCCGAACTACACAAGCATTGTTTTACAACTACAAGCAACTGCCCATCCAGCGGATGCTTGATTTCGACTTTCTTTGTGGAAGGGAAACACCATCAGTAGCTGGAATAATTAATCCTGGCTCTGAGGGATTTCAGAAGCTTTTTTTTGGTCAGGAAGAAATTGCAATCCCGGTTCATGCTAGCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGAAGTGCTGCCGCATCGTCCATGTCTGCTTTGAAGCAACCAACAGTTAGAGTTGTTGCTATAATTGCTGAAGGAGTACCCGAATCAGACACTAAGCAATTGATTGCGTATGCCAGGGCAAACAATAAGGTTGTTATTGGTCCGGCCACTGTTGGAGGAATTCAAGCCGGTGCATTTAAAATTGGTGACACAGCTGGAACAATTGATAATATAATTCACTGCAAGCTCTACAGGCCCGGATCTGTTGGATTTGTTTCTAAATCTGGTGGAATGTCCAACGAATTATACAACACTATTGGCCGTGTATCTGATGGAATTTATGAAGGCATTGCCATTGGAGGAGATGTTTTCCCTGGTTCCACTCTTTCTGATCATGTTTTGCGGTTTAACAATATACCACAGGTTAAAATGATAGTAGTACTTGGGGAGCTTGGTGGCCGAGATGAGTATTCCCTAGTTGAAGCCCTAAAACAAGGAAAAGTAACAAAACCAGTTGTTGCCTGGGTTAGTGGAACCTGTGCAAGACTCTTCAAATCTGAAGTGCAATTTGGTCATGCTGGAGCTAAGAGTGGGGGTGAGATGGAGTCTGCCCAAGCAAAAAATCAGGCACTAAAGGATGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTGGAAGCTGCAATTAAAGAGACATTTGACAAATTGGTTGAAGAAGGAAAGATCATGCCAGTGAAGGAGATTACTCCTCCACCAATCCCTGAGGACCTAAACTCTGCAATCAAGAGTGGAAAAGTCCGAGCTCCTACTCATATCATTTCCACCATTTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTGTCGAAAAAGGTTTTGGTGTGGGTGATGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCAATTTATTGAGATCTGCATCATGCTATGTGCCGACCATGGTCCCTGTGTCTCAGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTAGTTTCCAGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGAGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGATAGGGGCCTTACACCTTATGAATTTGTAGAAAATATGAAGAAGAAGGGCATTCGTGTGCCAGGAATAGGGCACAGGATCAAGAATCGTGACAACAAGGATAAGAGAGTTGAACTGCTACAGAAATTTGCACGGACTCATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTTGAAGCCTACACCCTTACAAAGGCAAATAATCTAGTTCTTAATGTAGACGGTGCGATTGGGTCCCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAGCAAGAGATTGATGAAATTGTGGAGATCGGCTATCTGAATGGTCTCTTTGTTCTGGCACGCTCCATAGGTCTGATTGGGCACACCTTTGACCAAAAGAGATTGAAGCAGCCGCTCTACCGCCACCCATGGGAGGATGTTCTCTACACAAAGTGA 2067 0.4499 MCLELRELTHESAKPPTQQRLLPPTNPILTCHVTHTLPLLPHYINPLSLLSPGFHFQFPNSLSLPLTSSPESTRSIYLFIMATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHASIEAACAAHPTADVFINFASFRSAAASSMSALKQPTVRVVAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIGRVSDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKDAGAVVPTSYEALEAAIKETFDKLVEEGKIMPVKEITPPPIPEDLNSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEKGFGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVENMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVEAYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g00838 688 Pfam Citrate synthase, C-terminal domain 479 678 IPR002020 GO:0046912
Adu04g00838 688 Gene3D - 218 403 IPR016102 -
Adu04g00838 688 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 216 IPR036291 -
Adu04g00838 688 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 248 273 IPR017866 -
Adu04g00838 688 Pfam CoA-ligase 254 378 IPR005811 GO:0003824
Adu04g00838 688 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 339 355 IPR017440 -
Adu04g00838 688 SUPERFAMILY Citrate synthase 214 686 IPR036969 GO:0046912
Adu04g00838 688 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 254 283 IPR033847 -
Adu04g00838 688 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 81 688 - -
Adu04g00838 688 CDD CCL_ACL-C 449 686 - -
Adu04g00838 688 Gene3D - 82 217 - -
Adu04g00838 688 Gene3D - 530 627 IPR016143 -
Adu04g00838 688 PANTHER ATP-CITRATE SYNTHASE 81 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g00838 Adu-Chr4 12521934 12529993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu04g00838 81 688 Acyl Lipid Metabolism Gene Families AT3G06650 93.421 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu04g00838 K01648 - gmx:100795745 1157.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g00838 04 12521934 12529993 Adu04g00838 04 12521934 12529993 ECH
Adu01g02558 01 94885975 94890994 Adu04g00838 04 12521934 12529993 PCT