Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04114 ATGCATCTAGAGGCGGAGACTTGGACAGCGTTGGTTGTGATATTGTGTTTCCTTGGTTTGATTCTGAAGGAGTCAATTATGGGAGGTAAGAGTTCAAGAGAATCTGGCGGTGATAGGAGGCATGTGCCATCGTACGGTTCTGGTGGTGCTTCATCTTCATCTTGGGACAATTATGGATACTCGCAACCGCCACCGTATGCATATCAACCGTCAATTCAACACCGGCCACCCGCCGCTCCGTATTACGATTATCAACAGCCGAAAAGGAGGTTGGATAGGAGATATTCCAAGATTGCTGATAATTACCGTTCACTCGACGAGGTTACTGCTGCTCTTTCACAAGCTGGCCTAGAATCTTCTAATCTCATTGTCGGCATTGATTTCACAAAAAGCAATGAGTGGACAGGAAAGAGATCATTCAACCGAAAAAGTTTACATCATCTCGGAAATGGCCATAATCCTTATGAACAGGCGATCTCCATTATTGGGACAACTCTATCTGCCTTTGACGAGGATAACTTGATTCCATGTTTTGGATTCGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCTACCCAGATGATAGATTCTGCAATGGATTTGAGGAAGTTTTGTCAAAATACAGAGAAATTGTTCCTCGTCTCAAACTAGCAGGACCCACTTCTTTCGCACCTATCATTGAGATGGCAATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGCGTTGACACAGAGCGTGGCCAGTTAAGTCCACAGGAACAGAAGACAATTGATGCAATTGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATAATAATGACATGTGTTTTATGTCCTGCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAGTGTAGATTCAGAAAGGAAAGAGACAGAGTTTGCTCTATCAGCTCTGATGGAGATACCTTCTCAATATAAGGCAACCATAGACCATGGCATATTGGGTGCTCGGAGGGGATATTCACCGGACAGGGTTGCTTTACCTCCACCTCAATATGACAGGGCTTCCAGCAGCAACAACATATCTTTTCGCAGTAATAGTTTTCAGCAGAGTACTCCTTCGCATACTGTCTATGATAATGCAGTTAGTACCAGTGCAGAATCATCACCGGGTGGCTTATATGATCATAAGCTTTGTCCAATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTAACTGTGGAGAGAATCTTGAATTCTGCCCCATTTGCAGGAGCACAATCGATACTAGAATAAAGCTTTACTAG 1374 0.4323 MHLEAETWTALVVILCFLGLILKESIMGGKSSRESGGDRRHVPSYGSGGASSSSWDNYGYSQPPPYAYQPSIQHRPPAAPYYDYQQPKRRLDRRYSKIADNYRSLDEVTAALSQAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHLGNGHNPYEQAISIIGTTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDRFCNGFEEVLSKYREIVPRLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDNNDMCFMSCQFVNFTEIMSKSVDSERKETEFALSALMEIPSQYKATIDHGILGARRGYSPDRVALPPPQYDRASSSNNISFRSNSFQQSTPSHTVYDNAVSTSAESSPGGLYDHKLCPICLTNGKDMAFGCGHQTCCNCGENLEFCPICRSTIDTRIKLY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04114 457 ProSiteProfiles Zinc finger RING-type profile. 414 447 IPR001841 -
Adu03g04114 457 SUPERFAMILY RING/U-box 408 453 - -
Adu03g04114 457 SUPERFAMILY vWA-like 121 306 IPR036465 -
Adu03g04114 457 SMART VWA_4 119 323 IPR002035 -
Adu03g04114 457 MobiDBLite consensus disorder prediction 29 54 - -
Adu03g04114 457 Pfam Copine 144 349 IPR010734 -
Adu03g04114 457 Pfam Zinc finger, C3HC4 type (RING finger) 411 452 - -
Adu03g04114 457 CDD RING-HC_RGLG_plant 413 457 IPR045317 GO:0061630|GO:0070534
Adu03g04114 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 457 IPR013083 -
Adu03g04114 457 PANTHER COPINE FAMILY PROTEIN 1 27 457 - -
Adu03g04114 457 PANTHER COPINE (CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING PROTEIN) FAMILY-RELATED 27 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04114 Adu-Chr3 130281291 130285369 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04114 K16280 - gmx:100800161 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g04114 03 130281291 130285369 Adu03g04114 03 130281291 130285369 ECH
Adu03g04114 03 130281291 130285369 Adu10g00800 10 10806348 10811321 PCT