Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03774 ATGGCTTCGGAAGTGAAGAGGCAAAGAGACCACGAAGAAGAAGAAGAAGACGAGAACGGTGCCCCTGTCTCAGATGGAATTGGAATATCATCCCTCATTCAAGGCTGGTTCTCCGAAATTAGTCCAATGTGGCCTGGAGAAGCACACTCATTGAAAGTGGAAAAAGTTTTGTTTCAAGGCAAGTCTGATTACCAGAATGTCATGGTGTTCCAGTCATCATCATATGGAAAGGTTCTTGTTTTGGATGGAGTCATACAGCTCACTGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTCCCTCTTTGCTCTATTCCAAATCCTAAAAAGGTCTTGGTTATTGGTGGAGGAGATGGAGGGGTCTTGAGAGAAGTATCACGCCATTCATCAGTTGAAAAGATAGACATTTGCGAAATTGACAAGATGGTTGTTGATGTCTCCAAGCAATTCTTCCCTGATGTAGCCATAGGTTTTGATGATCCCCGTGTGTCGCTTCATATTGGGGATGGAGTTGCATTCTTGAAGGAAGCTCCAGAAGGAACTTATGATGCAGTTATAGTTGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTCGAGTTGGTTGCTAAGGCTCTTCGGCCAGGAGGAGTTGTAAGTACTCAGGCAGAAAGTATATGGCTTCACATGGACATAATTGAGAGCATTGTCACCAATTGTAGCCAGACTTTCAAAGGCTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGCGGAATAATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTGGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTTTCAGAAGTCAGTAAGACCAATGAAATTTTACAACTCTGAGATTCATACAGCATCTTTCTGTTTGCCATCTTTTGCTAGGAGGAAGCTTGTTTCCAAAGCAAAATGA 975 0.4308 MASEVKRQRDHEEEEEDENGAPVSDGIGISSLIQGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAIGFDDPRVSLHIGDGVAFLKEAPEGTYDAVIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMDIIESIVTNCSQTFKGSVNYAWTTVPTYPSGIIGFMLCSTEGPPVDFKHPVNPIDEKEFQKSVRPMKFYNSEIHTASFCLPSFARRKLVSKAK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03774 324 PANTHER SPERMIDINE/SPERMINE SYNTHASE 14 323 IPR001045 GO:0003824
Adu03g03774 324 Pfam Spermine/spermidine synthase domain 92 279 - -
Adu03g03774 324 Gene3D Vaccinia Virus protein VP39 87 324 IPR029063 -
Adu03g03774 324 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 34 271 IPR030374 -
Adu03g03774 324 Gene3D Spermidine synthase, tetramerisation domain 28 86 IPR037163 -
Adu03g03774 324 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 32 318 IPR029063 -
Adu03g03774 324 PANTHER SPERMIDINE SYNTHASE-RELATED 14 323 - -
Adu03g03774 324 TIGRFAM speE: spermidine synthase 36 314 IPR001045 GO:0003824
Adu03g03774 324 MobiDBLite consensus disorder prediction 1 26 - -
Adu03g03774 324 CDD AdoMet_MTases 112 220 - -
Adu03g03774 324 Hamap Polyamine aminopropyltransferase [speE]. 35 320 IPR001045 GO:0003824
Adu03g03774 324 PIRSF Spermidine_synth 25 324 IPR030668 GO:0006595
Adu03g03774 324 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 113 126 IPR030373 -
Adu03g03774 324 Pfam Spermidine synthase tetramerisation domain 35 89 IPR035246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03774 Adu-Chr3 126418263 126421037 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03774 K00797 - gmx:100776863 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03774 03 126418263 126421037 Adu03g03774 03 126418263 126421037 ECH
Adu05g01485 05 24485586 24489453 Adu03g03774 03 126418263 126421037 PCT