Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03012 ATGGGAAATTCAGGGTCAACAGATGATTCTAGTGATGATTTCGTTCATCACCCTTCTTCTTATGATGGGATTTCGGGGACTACTAGCTATGATTATCATCAACCCTCTTCTTATGATGGGACTTCAAGGAATACTAGCTATGATTATTATCCCCAACCATCTTCTTATGATGCAACTTCAAAGAACACAAGCTATGAGGATTATCCCCAACCATCTTCTTATGATGCAACTTCAAAGAACAATAGCTATGAGGATTATCGCCAACCTTCTTCTTATGCTGGGAGTTCGAAGAATACTAAATACCAGCAAATCGAGCGCCCCACTTATATAGCTGATAATTTCAGTTCACTTGATCAGGTTATTACTGCTCTTAGAGAAGCTGGTCTGGAATCATCAAATTTAATACTTGGTATTGATTTCACCAAAAGCAACGAATGGACAGGCAAGCACTCATTCAACCACAAAAGCCTTCATCATATTGGCCGGATTCCGAATCCATACGAGCAGGCAATCTCCATCATCGGCCGTACTCTCGCTGCTTTTGACGAGGATAATCTGATTCCATGTTTTGGATTTGGTGATGCATCTACGCATGATAAGTATGTGTTCAACTTTTATCCTGATGGTCGCTCTTGTCGTGGTTTTGAGGAAGTACTTGCACGCTACAGAGAGATTGTTCCACTCTTAAAATTGGCAGGTCCAACATCATTTGCACCTGTAGTTGATGCAGCAATTGATATTGTGGAGAGAAGCCAGGGTCAATATCATGTTCTTGTAATTATTGCTGATGGACAGGTTACTAGAAGTTCAGATACACCACATGGAAAGCTTAGTCCACAAGAGCAAGCAACCATTGATTCTATTGTTGCTGCAAGTCACTATCCACTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGATGAAATGCAACGCTTCGATGATAACATTAAGCACCGGTTATTTGACAACTTTCAGTTTGTGAACTTCACAAAGATCATGTCCGAAAAAGAGGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATAGCCTTAAATTTACAACTTGGAAGTGGAAAATCAATAGGTAACCATCGAAGTAACAGGCCTCTGCCTCCGCCTAAGGAAGTTATAGACCATGACAATTCTGTCACCACAGTTCCACGAAATGTTGAATCGGTCGAGCCATCGGCTCCGGCTGTAACTGAATCAGTATGCCCTATTTGCCTAACGAATCCAAAGGACATGGCGTTTGGATGTGGCCATACAACTTGCAGGGAGTGTGGTGCAACATTATCTTCATGTCCTATGTGCCGGCAGGAAATTACAACTCGCCTGAAATTGTACAATTGA 1386 0.4192 MGNSGSTDDSSDDFVHHPSSYDGISGTTSYDYHQPSSYDGTSRNTSYDYYPQPSSYDATSKNTSYEDYPQPSSYDATSKNNSYEDYRQPSSYAGSSKNTKYQQIERPTYIADNFSSLDQVITALREAGLESSNLILGIDFTKSNEWTGKHSFNHKSLHHIGRIPNPYEQAISIIGRTLAAFDEDNLIPCFGFGDASTHDKYVFNFYPDGRSCRGFEEVLARYREIVPLLKLAGPTSFAPVVDAAIDIVERSQGQYHVLVIIADGQVTRSSDTPHGKLSPQEQATIDSIVAASHYPLSIILVGVGDGPWDEMQRFDDNIKHRLFDNFQFVNFTKIMSEKEASKKEAAFALAALMEIPIQYRIALNLQLGSGKSIGNHRSNRPLPPPKEVIDHDNSVTTVPRNVESVEPSAPAVTESVCPICLTNPKDMAFGCGHTTCRECGATLSSCPMCRQEITTRLKLYN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03012 461 MobiDBLite consensus disorder prediction 1 99 - -
Adu03g03012 461 MobiDBLite consensus disorder prediction 21 99 - -
Adu03g03012 461 ProSiteProfiles Zinc finger RING-type profile. 417 450 IPR001841 -
Adu03g03012 461 Pfam Copine 156 365 IPR010734 -
Adu03g03012 461 SMART ring_2 417 449 IPR001841 -
Adu03g03012 461 Pfam Zinc finger, C3HC4 type (RING finger) 414 455 - -
Adu03g03012 461 CDD vWA_copine_like 110 359 IPR010734 -
Adu03g03012 461 CDD RING-HC_RGLG_plant 416 460 IPR045317 GO:0061630|GO:0070534
Adu03g03012 461 PANTHER COPINE FAMILY PROTEIN 1 88 460 - -
Adu03g03012 461 SUPERFAMILY RING/U-box 412 456 - -
Adu03g03012 461 SMART VWA_4 131 334 IPR002035 -
Adu03g03012 461 SUPERFAMILY vWA-like 132 315 IPR036465 -
Adu03g03012 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 88 460 - -
Adu03g03012 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 461 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03012 Adu-Chr3 113278408 113281573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g03012 K16280 - gmx:100791316 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03012 03 113278408 113281573 Adu03g03012 03 113278408 113281573 ECH