Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02960 ATGGCAGCTGAGCGAGTTAATGCTGCAACAAGTCAGAAACTGACTGAAACTGACTGGATGAAAAATATTGAAATCTGTGAATTAGTTGCTCATGATCAAAGGCAAGCTAGAGATGTTGTTAAGGCCATAAAAAAGAGACTAGGCAACAAGAACCCCAATACACAACTTTATGCAGTTATGTTGTTGGAAATGTTGATGAACAACATTGGAGATCCAATTCATAAACAGGTTGTTGAAACAGGAACCATTCCTATTCTTGTGAAAATTGTGAAGAAAAAGTCAGATTTGCCTGTAAGGGAACGGATATTTCTCCTGCTAGATGCTACACAAACAGCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAATATTATAATGCATATTATGAGTTGGTGAGTGCTGGGGTGCAGTTTCCTCGAAGGGCTCAGGAATTCCAATCAAATTGTCCAAGTTCACAACCTAACAGGACTAATAATGGACCAAACAGGGAACAGGCCTTGCCTAGATCTGGTGGGGTTGCTCAGCAAGCGGAGTCCAATCCTGTTCCCGAATCTAGCATTATTCAGAAGGCTAGTAATGCATTAGAAGTTCTAAAAGAAGTCCTTGATGCTGTTGATGCGCAACATCCTCAGGGAGCAAGGGATGAATTCACCCTTGATCTTGTCGAGCAATGTTCGTTTCAAAAACAGAGAGTAATGCATCTTGTGATGGCTTCTCGTGATGAGAGGATTGTTTCACAAGCAATAGAATTAAACGAGCAGCTTCAGGAAGTTCTTGCAAGGCATGATGACCTCGTTTCTGGAAGAGCCACAACTCCCAATCACTTTGTCCATGAAGAAGTGGAAGAGGAGGAGGAACCTGAGCAGTTATTCCGAAGATTACGCAAAGGAAAGGCTTGTGCAAGGCCTGAAGATGAAGAGACTGAGCCTCGTTTCCCTAACTGGGGTTTGCTTGAAGAGAGACTCAACCGTGCACTAATAAGACCGCTCTCTTTGGAGCCATCTCGACAAACCAATACCCGTGCTGCACCTGTAGCGGTTCCACCTCCAAATGCAAGGAACAATGGTGAGCTTCCTCATGTAGCAATTCCACCACCACCTTCGAAGCACTTTGAAAGGGAGAGATATTTTCAGGAGAACAAGAAGGATGGTGCTACTTTGGCCAGTCACTTGAGGGGCCTCTCCTTGCATAGTTACAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTCTAGTGATTAA 1239 0.4415 MAAERVNAATSQKLTETDWMKNIEICELVAHDQRQARDVVKAIKKRLGNKNPNTQLYAVMLLEMLMNNIGDPIHKQVVETGTIPILVKIVKKKSDLPVRERIFLLLDATQTALGGASGKFPQYYNAYYELVSAGVQFPRRAQEFQSNCPSSQPNRTNNGPNREQALPRSGGVAQQAESNPVPESSIIQKASNALEVLKEVLDAVDAQHPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSQAIELNEQLQEVLARHDDLVSGRATTPNHFVHEEVEEEEEPEQLFRRLRKGKACARPEDEETEPRFPNWGLLEERLNRALIRPLSLEPSRQTNTRAAPVAVPPPNARNNGELPHVAIPPPPSKHFERERYFQENKKDGATLASHLRGLSLHSYNGSSSHSGSFDSSD 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02960 412 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Adu03g02960 412 MobiDBLite consensus disorder prediction 142 164 - -
Adu03g02960 412 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Adu03g02960 412 MobiDBLite consensus disorder prediction 142 184 - -
Adu03g02960 412 Gene3D - 2 136 IPR008942 -
Adu03g02960 412 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Adu03g02960 412 Coils Coil 187 207 - -
Adu03g02960 412 MobiDBLite consensus disorder prediction 366 380 - -
Adu03g02960 412 PANTHER TOM1-LIKE PROTEIN 1 412 IPR044836 GO:0035091|GO:0043130|GO:0043328
Adu03g02960 412 CDD VHS 2 130 - -
Adu03g02960 412 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 412 - -
Adu03g02960 412 MobiDBLite consensus disorder prediction 335 383 - -
Adu03g02960 412 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Adu03g02960 412 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Adu03g02960 412 SUPERFAMILY GAT-like domain 144 268 - -
Adu03g02960 412 CDD GAT_GGA_like_plant 186 264 - -
Adu03g02960 412 Gene3D - 183 273 IPR038425 -
Adu03g02960 412 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02960 Adu-Chr3 111706017 111709238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02960 - - gmx:100802949 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02960 03 111706017 111709238 Adu03g02960 03 111706017 111709238 ECH
Adu03g02960 03 111706017 111709238 Adu08g02654 08 42653180 42657779 PCT