Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02854 ATGGACCTGATTCATACGTTTCTGAACCTTGTAGCTCCTCCCTTCACCTTCTTTTTCCTATGCCTGTTCTTGCCACCGTACTGGGGCCTCAAGTTTATGGTGTCCATCCTAAGCTGGTTGCTGAGTGAGAATGTGGCTGGTAAAGTGGTTCACATCACAGGTGCTTCCTCTGGCATTGGGGAGTATTTGGCGTACGAGTATGCAAAGAGGGGTGCTTGCCTTGCGCTTTCTGCGAGGAGGGAAACTGCCCTCCATCAAGTTGCTGACACAGCCCGTCATCTTGGATCTCCCGATGTTATCGTTATGCGTGCCGATGTTTCCAAGCCTGAGGACTGCATGCGATTGATCGACCAAACTGTCAATCATTTTGGAAGACTGGATCACCTTGTAAATAACGCGGCAATCAGCATTGCTACCTTGTTTGAAGAAACCCCTGATATCTCCAATTTGAGGCCTATCATGGAAACAAACTTTTGGGGATCAGTATACACAACCCGTTATGCATTACAGCATCTGAGGAAGAGCAGAGGCAAAATCGTGGTCATGTCATCTGTAGATTCATGGTTGCCTGCGCCCAGAAGGCACATCTATAGCGCAAGCAAAGCAGCATTGGTGAGCCTGTATGAAACGCTGAGGGTGGAGGTCGGGTCGGAAATAGGCATAACAATCGTGACACCGGGGTACATAGAGTCGGAAATAACGAAAGGGAAGTTCCTAAGCGCACAAGGGGAGGTCGATGTTGATCAGGATCTGAGAGACGTGGAGGTGAGCGCAGTGCCGGTGGGGTCAGTGAGTGGATGCGCCGAATCGATAATAAAGAGCACTTTGAGGGGAGACAGGTGCCTAACTGTACCCTCATGGTTCAGGATGACATACCTCATCAAACTCCTCTGCCCTGAGCTTCTCGAGTGGACCTTCAGGTTGCTGTATCTAACTGCACCCGGAACTCCCACAAGTGATGCACTTAGCAAGAAGATTCTAGACGCCACCGGTGCCAAGAACTTGTTCTACCCTCCTTCCATCCAATCCCCTGATGTCAAGACTGATNNNNNNNNNNNNNNTGCATGGCCATAG 1074 0.4935 MDLIHTFLNLVAPPFTFFFLCLFLPPYWGLKFMVSILSWLLSENVAGKVVHITGASSGIGEYLAYEYAKRGACLALSARRETALHQVADTARHLGSPDVIVMRADVSKPEDCMRLIDQTVNHFGRLDHLVNNAAISIATLFEETPDISNLRPIMETNFWGSVYTTRYALQHLRKSRGKIVVMSSVDSWLPAPRRHIYSASKAALVSLYETLRVEVGSEIGITIVTPGYIESEITKGKFLSAQGEVDVDQDLRDVEVSAVPVGSVSGCAESIIKSTLRGDRCLTVPSWFRMTYLIKLLCPELLEWTFRLLYLTAPGTPTSDALSKKILDATGAKNLFYPPSIQSPDVKTDXXXXXAWP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02854 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 310 IPR036291 -
Adu03g02854 357 PANTHER RETINOL DEHYDROGENASE-RELATED 1 341 - -
Adu03g02854 357 Gene3D - 38 312 - -
Adu03g02854 357 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Adu03g02854 357 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Adu03g02854 357 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Adu03g02854 357 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Adu03g02854 357 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Adu03g02854 357 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Adu03g02854 357 Pfam short chain dehydrogenase 48 236 IPR002347 -
Adu03g02854 357 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 341 - -
Adu03g02854 357 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Adu03g02854 357 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Adu03g02854 357 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02854 Adu-Chr3 107745630 107747412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02854 43 262 Acyl Lipid Metabolism Gene Families AT1G24360 28.251 6.12e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02854 K22418 - pvy:116105445 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02854 03 107745630 107747412 Adu03g02854 03 107745630 107747412 ECH