Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02177 ATGTTGATTCGGTTCCATTGGCTTCAATCTGAACTCAGCAACTGCATATGCAAGTCACTTTTGAGGGCTAAGCAGTTACATGCTTTGCTTTTAAGGACCCATCTCTTAGAGGATCCCTTTTATGCAACTAAACTTGTTAGGCTCTATGCTGCCAACAATGACATTCACTCTGCATACCAAGTGTTTGATGAAAGTTCTACAAGAAGTGTCTACCTTTGGAACTCCATCATTCGTGCTTATGCTCAGTCCAGTAGATTTGACAGTGCAATCTCCTTGTTTAGAACTATGTTTGGAGCTGATATAAGCCCTGACAATTACACTTATGCTTGCGTTATTCGCGCGTGCTGCGACAACTTTGATTTTGGCATGCTGAGACTTGTTCATGGAGCTGCTGTGGCTTCTGGGTTTGGAATGGACCCTATTTGCTGCAGTGCTCTTGTGGCAGCATATTCAAAGCTTGGTTTTGTTAATGATGCACATAGAGTGTTCAATGGCATCGCTGCACCCGATTTGGTTTTGTGGAATTCACTGATTTCTGGTTATGTGTGCTCTGGCTCTTGGGAGATAGGGATGCGTATGTTTAACTGGATGCGACATGTTGGGGGGAAGCCAGATGGATTTACACTTGCTGGATTACTTGGTGGGATCACAGATTCTAGCATGATGAGTATCGGCCAAGGATTACATGGTTTAAGCTTAAAGAGTGGGCTAGATTCTGACTCCCATGTAGGTAGTTTACTGGTGAGTATGTACTCAAGATGCAAGTGCATGGCTTCAGCATATAGCGTCTTTTTCAGTATTTTCCAGCCTGATTTGGTCACCTGGTCTGCTCTTATTGCTGGCTATTCGATGTCCGGGGAGTATGAGAAGGCATTGTTCTATTTCAGGAAATTAAACAAGGGAAACAAGAAGCCTGACTCTGTTTTGATTGCTAGTGCATTGGCTGCTATAGCTCAGGCAGCGAATATAGGACCCGGATATGAGATACATGGTTATGTTATTCGGCATGGATTCGAATCAGATGTCAAGGTCTCTTCAGCTCTTGTAGATATGTATTCAAAGTGTGGCTTCTTGCACTTGGGAACTCGAGTTTTCAGGATAATGCCAGAACGGAATATAGTTTCTTATAATTCCATTATTTCTGGTCTTGGTTTGCATGGATGTGCTTCTGAGTCTTTTAAGATGTTTGATGAGATGTTGGCAAAAGGATTAATGCCTGATGAAGCCACATTTTGCGCTCTCCTTTGTGCTTGTTGTCACGCTGGCCTTGTCAAAGACGGCCGGGAGATTTTCCATCGAATGAAAGATGAATTTCACATCATGGCTATGCCTGAGCACTATGTTTACATGGTTAAGCTTCTTGGCAGTGCTGGCCACTTGGAAGAGGCTTACAAACTCGTTCAGTCCTTATCGGAACCAGTAGACAAGGCCATCCTTGGAGCCCTATTATCATGCTGTAATTCTAGTGGAAATTCCAAGATGGCAGAAAATGTAGCTCAGCAACTTTTTGAAAGTAATCCTGATGATAATGCTTACAGCGTTATGCTTTCTAATATATATGCAGGTGATGGGAGGTGGGACGAGGCGAAGAACTTGAGAGACAGAATAACAGGAGGTCAGAGAAAAATGCCCGGACTGAGCTGGACTGAAGGAAGTTTCTGCTAA 1665 0.4336 MLIRFHWLQSELSNCICKSLLRAKQLHALLLRTHLLEDPFYATKLVRLYAANNDIHSAYQVFDESSTRSVYLWNSIIRAYAQSSRFDSAISLFRTMFGADISPDNYTYACVIRACCDNFDFGMLRLVHGAAVASGFGMDPICCSALVAAYSKLGFVNDAHRVFNGIAAPDLVLWNSLISGYVCSGSWEIGMRMFNWMRHVGGKPDGFTLAGLLGGITDSSMMSIGQGLHGLSLKSGLDSDSHVGSLLVSMYSRCKCMASAYSVFFSIFQPDLVTWSALIAGYSMSGEYEKALFYFRKLNKGNKKPDSVLIASALAAIAQAANIGPGYEIHGYVIRHGFESDVKVSSALVDMYSKCGFLHLGTRVFRIMPERNIVSYNSIISGLGLHGCASESFKMFDEMLAKGLMPDEATFCALLCACCHAGLVKDGREIFHRMKDEFHIMAMPEHYVYMVKLLGSAGHLEEAYKLVQSLSEPVDKAILGALLSCCNSSGNSKMAENVAQQLFESNPDDNAYSVMLSNIYAGDGRWDEAKNLRDRITGGQRKMPGLSWTEGSFC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02177 554 Pfam PPR repeat 142 164 IPR002885 -
Adu03g02177 554 Pfam PPR repeat 273 298 IPR002885 -
Adu03g02177 554 Pfam PPR repeat 172 195 IPR002885 -
Adu03g02177 554 TIGRFAM PPR: pentatricopeptide repeat domain 71 104 IPR002885 -
Adu03g02177 554 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Adu03g02177 554 TIGRFAM PPR: pentatricopeptide repeat domain 374 408 IPR002885 -
Adu03g02177 554 TIGRFAM PPR: pentatricopeptide repeat domain 410 437 IPR002885 -
Adu03g02177 554 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Adu03g02177 554 SUPERFAMILY TPR-like 50 532 IPR011990 GO:0005515
Adu03g02177 554 Pfam E motif 492 550 IPR046848 -
Adu03g02177 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Adu03g02177 554 PANTHER OS01G0545900 PROTEIN 6 550 - -
Adu03g02177 554 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 550 - -
Adu03g02177 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Adu03g02177 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 437 IPR002885 -
Adu03g02177 554 Gene3D Tetratricopeptide repeat domain 226 323 IPR011990 GO:0005515
Adu03g02177 554 Gene3D Tetratricopeptide repeat domain 4 122 IPR011990 GO:0005515
Adu03g02177 554 Gene3D Tetratricopeptide repeat domain 123 225 IPR011990 GO:0005515
Adu03g02177 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Adu03g02177 554 Gene3D Tetratricopeptide repeat domain 324 440 IPR011990 GO:0005515
Adu03g02177 554 Gene3D Tetratricopeptide repeat domain 441 552 IPR011990 GO:0005515
Adu03g02177 554 Pfam PPR repeat family 69 116 IPR002885 -
Adu03g02177 554 Pfam PPR repeat family 371 420 IPR002885 -
Adu03g02177 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02177 Adu-Chr3 42381853 42383517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g02177 29 550 Glycoside Hydrolase AT3G49170 29.755 1.00e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02177 - - gmx:100820049 813.142