Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g02176 ATGGAGAAGAGAGAGAGTGAGTATGGTGGTGGTGCCTCGCTACCTTCACAATCATGCAGAGACGCGAACGAAAGAAAGGTGACGTACTTCTACGAACCCACCATTGGAGACTTCTTCTACGGTCATGGTCATCCAATGAAGCCTCACCGGATCCGCATGGCTCACAGCCTCGTCGTCCATTACGGCCTCCACCGCCTTTTGCACGTCTCCCGTCCCTTTCCGGCTTCCGCCTCCGACGTCGGCCGCTTCCACTCCGACGACTACGTTCAATTCCTTTCCACTGTCACGCCGGACCTCGCTGTCGCCGCTCACGCCAACCACTCCAATTACCGCACGCTCCGGCGATTCAATGTTGGCGATGATTGCCCCGTTTTCGACGGCCTCTTTAACTTCTGCCGTGTCTCCGCCGGCGCCTCCATCGGCGCCGCCGTCACGCTCAACCGTGGTGATGCTGATATTGCTGTTAATTGGGCCGGTGGCCTCCACCATGCCAAGAAAGCTGAGGCTTCGGGATTCTGTTATGTTAACGACATCGTTCTTGGGATTCTTGAGCTCCTCAAGATTCACAAGCGTGTGCTGTATGTTGACATTGATGTTCACCACGGTGATGGCGTTGAAGAGGCCTTTTACACTACTGATAGAGTGATGACAGTGTCTTTCCATAAGTATGGGGATTTTTTCCCAGGCAGTGGGCACATAAAAGACATTGGGGTGGGCGAAGGAAAGAATTATTCTCTGAATGTTCCACTAAATGATGGAATGGATGATGAAAGTTTCCGTGGCCTGTTTCGTCCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCTCTGTCAGGTGACAGGTTGGGTTGCTTCAACTTGTCTGTGAAGGGTCATGCAGATTGTGTTCGTTTCCTTCGATCATTCAATGTTCCTCTGATGCTTTTAGGTGGAGGAGGATATACGATTCGTAATGTTGCTCGCTGTTGGTGTTACGAGACAGCGGTGGCAGTGGGAGTTGAGCTTGATAATGACTTGCCTTACAATGAATACTACGAGTATTTTGGCCCTCAATATGTTCTTCATTACAAGCCTTCGAGACGGGATAACCTAAACAAGCCCAGAGATCTAGAAAAGATTAGGATCAAGTTACTAGAACGGCTCTCCAGACTTAGCCATGCACCCAGTGCTCCTTTTCAGACAACTCCATCGGTTACAAATGTTCCAGAAGAGGAAGAAGAGGATATGGATGTAAGACCAAATTGTCGCCTATGGAACGGTCAAGATTTTGATTCGGATAATGATGAAAATGTGAAGAATACAAAATCTTCAAACTCAGCTGGCTGA 1359 0.4886 MEKRESEYGGGASLPSQSCRDANERKVTYFYEPTIGDFFYGHGHPMKPHRIRMAHSLVVHYGLHRLLHVSRPFPASASDVGRFHSDDYVQFLSTVTPDLAVAAHANHSNYRTLRRFNVGDDCPVFDGLFNFCRVSAGASIGAAVTLNRGDADIAVNWAGGLHHAKKAEASGFCYVNDIVLGILELLKIHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGSGHIKDIGVGEGKNYSLNVPLNDGMDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCVRFLRSFNVPLMLLGGGGYTIRNVARCWCYETAVAVGVELDNDLPYNEYYEYFGPQYVLHYKPSRRDNLNKPRDLEKIRIKLLERLSRLSHAPSAPFQTTPSVTNVPEEEEEDMDVRPNCRLWNGQDFDSDNDENVKNTKSSNSAG 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g02176 452 Gene3D Histone deacetylase domain 14 407 IPR037138 -
Adu03g02176 452 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 PIRSF HDAC_I_euk 11 451 IPR003084 GO:0004407|GO:0016575
Adu03g02176 452 SUPERFAMILY Arginase/deacetylase 25 394 IPR023696 -
Adu03g02176 452 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Adu03g02176 452 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Adu03g02176 452 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Adu03g02176 452 PANTHER HISTONE DEACETYLASE 10 446 - -
Adu03g02176 452 MobiDBLite consensus disorder prediction 399 452 - -
Adu03g02176 452 Pfam Histone deacetylase domain 44 339 IPR023801 -
Adu03g02176 452 PANTHER HISTONE DEACETYLASE 6 10 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g02176 Adu-Chr3 42373470 42376355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g02176 K06067 - gmx:100801159 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02176 03 42373470 42376355 Adu03g02176 03 42373470 42376355 ECH
Adu01g01764 01 65635874 65640319 Adu03g02176 03 42373470 42376355 PCT