Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01172 ATGGTCATATACCTGTCTCCTTCTCCTCCTTCACATTCTTCCACTTCCATACTCAGATTCTCAAACTCAAGGACACCCATTTCGGATTCTTCCTTCAAGCCCAAACCCCATTTCTCAATACCACTTTTTTCTCACTCTTTTGGCTCCAATTTTTCAACTTTAACATTCAAGAAGCAGTTATTGAATCACAATAATAGTAGTGGCCGGTTCACACATGGAAACAGGGTTGATTTCAGGACCTTGGCTATTCCTGGGTTTGACTATGGAAACTTTGAAGGTCCTCAATCTGTTCTTGAAGCTGCTGCTGTTCTAACAGCAATCATTGTTGTTCATGAAAGTGGCCATTTCCTTGCTGCTTCACTTCAAGGTATCCATGTGAGTAAGTTCGCTGTTGGGTTTGGTCCAATTCTAGCTAAGTTCAATTCAAAGAATGTTGAGTATTCTATTAGAGCTTTCCCTCTAGGTGGATTTGTTGGGTTCCCTGATAATGATCCTGAAAGTGATATCCCTGTTGATGATGAGAATTTGCTTAAGAACAGGCCAATTTTGGATAGGGTTCTTGTTGTTTCAGCTGGTGTTATTGCCAACATAGTGTTTGCAATTGCTATAATCTTTGTTCAAGTTCTCACTGTTGGTTTGCCTGTTCAAGAGGTTTTCCCTGGTGTTATGGTTCCTGATGTGAAACCCTTTTCAGCTGCTTCTAGAGATGGATTGCTTCCTGGTGATTTGATTCTTCAGGTTAATGGTAGTGAGTTTCCAAAACCGGGTCCTAGTTCTGTTACTAAGGTTGTTGATGTTATCAAGAAGAACCCCAAGAGATATGTTTTGCTTAAGGTTAAGAGGGGGATGCAGGACTTTGAAATTAGGGTCACCCCAGATGAGAATTTTGATGGGACTGGTAAAATTGGTGTTCAGTTATCACCAAATGTGAAGATTGAAAAAGTTAGGCCAAAGAATCTTGTGGAAGCTTTGAACTTTACTGGGAAAGAATTTTGGGGTCTTTCTTCTAATGTTTTAGATGGATTGAAGCAGACATTCTTGAACTTTTCACAGTCTGCTGGTAAGGTTTCAGGTCCTGTGGCGATTATTGCTGTCGGCGCTGAAGTTGCGAGATCAAACATTGATGGTCTTTACCAATTTGCTGCCATACTCAACATTAACCTTGCTGTTATTAACCTCCTTCCCTTGCCTGCTTTGGATGGGGGTTCGTTGGCATTGATCTTTATCGAGGCGGCCAGGGGTGGGAGGAAGCTACCTTTGGAAGTGGAACAACGGATAATGTCGTCCGGAATCATGTTTGTTATACTTCTGGGGTTATTCCTCATTGTTCGCGATACCTTAAACCTTGATATTATCAAAGATATCTTGTAA 1371 0.4121 MVIYLSPSPPSHSSTSILRFSNSRTPISDSSFKPKPHFSIPLFSHSFGSNFSTLTFKKQLLNHNNSSGRFTHGNRVDFRTLAIPGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNSKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRVLVVSAGVIANIVFAIAIIFVQVLTVGLPVQEVFPGVMVPDVKPFSAASRDGLLPGDLILQVNGSEFPKPGPSSVTKVVDVIKKNPKRYVLLKVKRGMQDFEIRVTPDENFDGTGKIGVQLSPNVKIEKVRPKNLVEALNFTGKEFWGLSSNVLDGLKQTFLNFSQSAGKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAVINLLPLPALDGGSLALIFIEAARGGRKLPLEVEQRIMSSGIMFVILLGLFLIVRDTLNLDIIKDIL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01172 456 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 69 456 - -
Adu03g01172 456 CDD S2P-M50_PDZ_RseP-like 97 448 - -
Adu03g01172 456 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 69 456 IPR004387 GO:0004222|GO:0006508|GO:0016021
Adu03g01172 456 ProSiteProfiles PDZ domain profile. 211 282 IPR001478 GO:0005515
Adu03g01172 456 CDD PDZ_metalloprotease 209 292 - -
Adu03g01172 456 SMART pdz_new 209 283 IPR001478 GO:0005515
Adu03g01172 456 TIGRFAM TIGR00054: RIP metalloprotease RseP 223 449 IPR004387 GO:0004222|GO:0006508|GO:0016021
Adu03g01172 456 SUPERFAMILY PDZ domain-like 181 282 IPR036034 GO:0005515
Adu03g01172 456 Pfam PDZ domain 224 281 IPR041489 -
Adu03g01172 456 Pfam Peptidase family M50 101 437 IPR008915 GO:0004222|GO:0006508
Adu03g01172 456 Gene3D - 214 307 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01172 - - lang:109351773 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01172 03 13113869 13115730 Adu03g01172 03 13113869 13115730 ECH