Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01029 ATGATAATAACCGCTACTTTCCGACCACTAAGCTTCCGTCCAAGGTTGTGCATTCTGAGCAAGAAGAAGGAGAAGAGCGACAACAAAAGTAGAACCAGGAAACTGAGCAAGTGGCAAACAGAGACCAACCATAATATCTTTTCCTTCCCAAAATCCAAATCAACCCCACTTCTCATCAATCGCCAACCCAATCCCCAAACAAAATCCCAAGCACTTGAACAAGTCCTCAACGACCTCGAAGCTTCCCTTGAGAAGGGCATCACTATTGAACCCGAAATCTATGCTTCTCTCTTAGAAACATGCTACCGTTTTCAATCCATTCACCACGGCATCCGACTTCACCGCCTTATCCCAACCACCCTTTTGCACAGAAATGTTGGTATATCCTCCAAGCTTCTTAGATTATACGCTTCTTTTGGTTACATGGATGAGGCACACGACCTGTTTGATCAAATGCCTAAGAGAGATGAATATGCATTTCCATGGAATTCACTCATTTCAGGGTATGCTCAAGCTGGCCTCTATCATGATGCCATAGCACTCTACTTCCAAATGGTGGAAGAGGGTGTTGAACCGGACTTGTTTACATTTCCTCGGGTTCTCAAGGCGTGCGGAGGAATTCGTTCGGTCGAAGTTGGGGAAGAGGTGCATCGTCACGTGGTTCGTTCTGGTTTTGCCAGTGATAGGTTTGTCCTCAATGCACTCCTTGATATGTATTCTAAGTGTGGTGATATTGTTATGGCTCGCAAGATTTTTGAAAAGATGCCCAATAAAGATTCTATTTCGTGGAATTCAATGCTTGCAGCTTATGTTCATCATGGCCTTGAGGTTGATGCAATCAACACTTTCCACAGAATGCTTTTGAAAGGTTATGAGCCTGATTCTGTTTCCATATCGAAAATTCTTACTGGTGTGTCATCATTGATTCTTGGGGCCCAAATTCATGGATGGGTGATCCGGCGTGGGATTGAGTGGAACTTGTCAGTTGCTAATTCCTTGATCAGAGTGTACTCCAATCATGGCAAGTTAGATAAAGCACGTTGGATATTCAAAGTGATGCCAGAGAAGGATGTTGTGTCATGGAACACTATAATCTCTGCTCATTGCAAACGAAGAGAGGCTCTAGATTATTTTAATCAAATGGAGCATGCTGGAGTAAAACCTGATAAAGTAACATTTGTTTCATTATTATCAGCTTGTGCTTATTTGGGTTTGGTGAAGGATGGAGAGAGGTTGTTTGCTTTGATGTGTGAAAAATATAAAATAGAACCAATTATGGAACATTATGGTTGTATGGTTAATCTTTGTGGAAGAGTAGGAATGATTGAAAAGGCTTATAGCATCATAGTGAATGGAATGGATTCGGAGAATGCTAGTCCAACTCTCTGGGGAGCTTTGTTGTATGCTTGCTTTTTACACGGAGACGTAACAATAGGAGAGATTGCTGCAAACAAGCTTTTTGATTTGGAGCCAGACAATGAACACAATTTTGTACTTCTCATGAAGATCTACGAAAAGGCAGGCAAATCAGAGGACATGGAGAGAGTTAGATTGATGATGGTAGAAAGAGGCCTGGATTATTAA 1584 0.4186 MIITATFRPLSFRPRLCILSKKKEKSDNKSRTRKLSKWQTETNHNIFSFPKSKSTPLLINRQPNPQTKSQALEQVLNDLEASLEKGITIEPEIYASLLETCYRFQSIHHGIRLHRLIPTTLLHRNVGISSKLLRLYASFGYMDEAHDLFDQMPKRDEYAFPWNSLISGYAQAGLYHDAIALYFQMVEEGVEPDLFTFPRVLKACGGIRSVEVGEEVHRHVVRSGFASDRFVLNALLDMYSKCGDIVMARKIFEKMPNKDSISWNSMLAAYVHHGLEVDAINTFHRMLLKGYEPDSVSISKILTGVSSLILGAQIHGWVIRRGIEWNLSVANSLIRVYSNHGKLDKARWIFKVMPEKDVVSWNTIISAHCKRREALDYFNQMEHAGVKPDKVTFVSLLSACAYLGLVKDGERLFALMCEKYKIEPIMEHYGCMVNLCGRVGMIEKAYSIIVNGMDSENASPTLWGALLYACFLHGDVTIGEIAANKLFDLEPDNEHNFVLLMKIYEKAGKSEDMERVRLMMVERGLDY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01029 527 Gene3D Tetratricopeptide repeat domain 212 307 IPR011990 GO:0005515
Adu03g01029 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Adu03g01029 527 Pfam PPR repeat 261 290 IPR002885 -
Adu03g01029 527 Pfam PPR repeat 232 258 IPR002885 -
Adu03g01029 527 Pfam PPR repeat 428 448 IPR002885 -
Adu03g01029 527 Pfam PPR repeat 132 155 IPR002885 -
Adu03g01029 527 SUPERFAMILY TPR-like 135 512 IPR011990 GO:0005515
Adu03g01029 527 Pfam E motif 473 524 IPR046848 -
Adu03g01029 527 Gene3D Tetratricopeptide repeat domain 308 372 IPR011990 GO:0005515
Adu03g01029 527 Gene3D Tetratricopeptide repeat domain 373 526 IPR011990 GO:0005515
Adu03g01029 527 Gene3D Tetratricopeptide repeat domain 67 211 IPR011990 GO:0005515
Adu03g01029 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Adu03g01029 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Adu03g01029 527 PANTHER - 35 526 - -
Adu03g01029 527 PANTHER OS01G0913400 PROTEIN-RELATED 35 526 - -
Adu03g01029 527 Pfam PPR repeat family 162 204 IPR002885 -
Adu03g01029 527 Pfam PPR repeat family 356 401 IPR002885 -
Adu03g01029 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Adu03g01029 527 TIGRFAM PPR: pentatricopeptide repeat domain 162 193 IPR002885 -
Adu03g01029 527 TIGRFAM PPR: pentatricopeptide repeat domain 359 389 IPR002885 -
Adu03g01029 527 TIGRFAM PPR: pentatricopeptide repeat domain 231 258 IPR002885 -
Adu03g01029 527 TIGRFAM PPR: pentatricopeptide repeat domain 261 295 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01029 Adu-Chr3 10716726 10718574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01029 95 525 Glycoside Hydrolase AT3G49170 33.710 1.05e-72 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01029 - - gmx:112997711 803.897