LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g00916	ATGGATGGTTACGAAGCAACTAGGATAGTGTTCTCAAGGATCCAAAGCATGGACCCTGAAAACGCTTCAAAAATCATGGGTCTTCTTCTGATTCAAGACCATGGTGAGAAGGAGATGATTAGGTTAGCATTTGGACCAGAAGCTTTACTTCACTCTGTGATTTCCAAAGCTAGAAAAGACTTAGGTTTACCTTCAAACTCTCCTCCTACACCTTCAACTCCACCATCTCCATCACCTTTTCTTTCAGCTTCTACCAACCCGGTTAACATTTCAAGGCAGAACTCAACTTCTTCTTCTTCAAGGCTTGGTAGTGGGATGAACCTTCCACCTGCTCTAACCATACCAAACCCTTCTTCTTCTTCAGCTTCTTGGGCTGCCATGTCTGACCTTCAAAACCCTGAGGACTTGATGAGTCCTAACAACTTGGTTGTTGGTTCTTCTTCCACAACTTCATCTTCTCTACCCTTTTATGCAAATGGAGGGTCAGATCCAATTGATGAGTACCAGTTACAGGACCAGCTTTCATTCTTGAACGATGGTTCTCCAAATTCTACTCTTGCTGCGGCTGCTTGTGGTGGTTCACACCATAACAAGAGCCATGATTTGTTCTACCCTCACTCAGACATGGCTTCTAGTCCTACTGGTGCTGGTGACCCCTCTTTGTTCCCTTCTTATGGCTGGGGAGGGCCTCTTCATAGGAGAAGTTGTTCAGTGAATGATGCATGTTTGGCTTCAGAGGATCCCAATTCCGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCACTAGCTGCAGGTTCCTCCATGGTGGTGGACTTGGAGAAGCTGATGGTGCTGCTGCTGCTGCTGCAATGGTTGGTTCTCCAAGCAAGATTGAGATGATGGAGCAGTGTCATGAACTTCTCAGATCTAAAACTGCTCAGCAACAAAGATTTGCTGCTGCTTCTCAACTCATGGCATCTTCAAGCTTTCCTTACTCTTCAAAGTGCATGAATTTCCTCTTACAACAACAGCAGCAGCAGCAGCAAAATGATACTCAAAGGGCTGCGGCTGCGGCTTTGATGATGAGCGAGGACTTGCACAAATTCGGAAGATCGAGGCTTGAAAGGAGTGACTTCTCTCTGAACAGCCCTGGCATGGTCAACCCAGCTTCCAGGCAGATCTATTTGACTTTCCCAGCTGACAGCACTTTTAGAGAGGAAGATGTTTCCAACTACTTCAGCATTTATGGGCCAGTTCAAGATGTGAGAATCCCATACCAGCAGAAGCGCATGTTCGGATTTGTTACATTCGTTTATCCGGAGACTGTGAAGCTCATTCTCTCAAAAGGGAACCCTCATTTTGTGTGTGATGCAAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCAGACAAGTACAGGAAGCAACAGCAACAGGTAGATAGGGATTTTTCACCGTGTGGCACTCCTACTGGACTAGATGCTAGAGACCAATATGATCTCCAACTAGGAGGGAGAATGTTCTACAACACTCAAGACATGCTTTGGAGGAGGAAGATGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGTTGATGGGTCTGCAGCTCCTTGACATCAAGAAGCAGCACCATCATCGCGCCCTCTCCGCCGGAAGTCCGATACCATCCCCAACACACTCTCCTAACATGTTCAACCAAACTCTTGTTCATCATTCGTTTCACGGCACCCCGGATTCACCGGAGGAGAATGGATCAGCTTCTGCTCCAAGTAGCACAGCACCGGTTTCGGTTATTGGTCAACAGACAGTCAACATATCTGTTGGCAAGGAAGTTGGAACCAATAATGGAGAGAATGGATATAGTGATGGCAATGGCAATGGCAAGCAAAGTTCAAGTCATGAAGACAGTGATCTACAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCACCTACAAAAGCTGCTGTTGGGGATTACATGGCTGCCTTCAACAATGGACCTAATGAGGCCATTGATGCAGATCCCTCAGCTTCTTCTGCCAACTCCAAATTTGGAACTAGCTCTCTACTTCCATCAGCATCTGCTCTTGACATGGGTTCATTCAAATCCTTTAACTGCCAAATACCTAGGTTCTCTTCTGGCCATGGAACTATCGGGATGTTAGCCGGGACCGGCGGCGCCATCGGCATTTAG	2226	0.4677	MDGYEATRIVFSRIQSMDPENASKIMGLLLIQDHGEKEMIRLAFGPEALLHSVISKARKDLGLPSNSPPTPSTPPSPSPFLSASTNPVNISRQNSTSSSSRLGSGMNLPPALTIPNPSSSSASWAAMSDLQNPEDLMSPNNLVVGSSSTTSSSLPFYANGGSDPIDEYQLQDQLSFLNDGSPNSTLAAAACGGSHHNKSHDLFYPHSDMASSPTGAGDPSLFPSYGWGGPLHRRSCSVNDACLASEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGLGEADGAAAAAAMVGSPSKIEMMEQCHELLRSKTAQQQRFAAASQLMASSSFPYSSKCMNFLLQQQQQQQQNDTQRAAAAALMMSEDLHKFGRSRLERSDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVDRDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDIKKQHHHRALSAGSPIPSPTHSPNMFNQTLVHHSFHGTPDSPEENGSASAPSSTAPVSVIGQQTVNISVGKEVGTNNGENGYSDGNGNGKQSSSHEDSDLQECLEHNLPDSPFASPTKAAVGDYMAAFNNGPNEAIDADPSASSANSKFGTSSLLPSASALDMGSFKSFNCQIPRFSSGHGTIGMLAGTGGAIGI	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu03g00916	741	ProSiteProfiles	Zinc finger C3H1-type profile.	251	278	IPR000571	GO:0046872
	Adu03g00916	741	SMART	c3hfinal6	253	277	IPR000571	GO:0046872
	Adu03g00916	741	Gene3D	-	244	323	-	-
	Adu03g00916	741	MobiDBLite	consensus disorder prediction	578	640	-	-
	Adu03g00916	741	MobiDBLite	consensus disorder prediction	60	125	-	-
	Adu03g00916	741	Gene3D	-	332	482	IPR012677	-
	Adu03g00916	741	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	392	468	IPR000504	GO:0003723
	Adu03g00916	741	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED	1	729	-	-
	Adu03g00916	741	MobiDBLite	consensus disorder prediction	471	493	-	-
	Adu03g00916	741	MobiDBLite	consensus disorder prediction	578	647	-	-
	Adu03g00916	741	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	404	449	IPR000504	GO:0003723
	Adu03g00916	741	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	256	276	IPR000571	GO:0046872
	Adu03g00916	741	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS)	1	729	-	-
	Adu03g00916	741	SUPERFAMILY	CCCH zinc finger	254	276	IPR036855	GO:0046872
	Adu03g00916	741	MobiDBLite	consensus disorder prediction	67	81	-	-
	Adu03g00916	741	MobiDBLite	consensus disorder prediction	82	125	-	-
	Adu03g00916	741	SMART	rrm1_1	393	463	IPR000504	GO:0003723
	Adu03g00916	741	SUPERFAMILY	RNA-binding domain, RBD	404	486	IPR035979	GO:0003676
	Adu03g00916	741	CDD	RRM_AtC3H46_like	394	463	IPR034365	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g00916	Adu-Chr3	9157559	9161934	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g00916	-		-	adu:107477482	1378.62

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu03g00916	03	9157559	9161934	Adu03g00916	03	9157559	9161934	ECH