Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00909 ATGAATTCCTTTCTTCCTAAACCGAAACTCTCCAATCCCCTGAATTCCCCTGTTCCAAAAACCAAGCTTTCTACTTCAATGGATTCAACTCTTTCACAAGACCCCATCTTCTCCATTCTTTCAAAAACTAATCTTTCTTCTGTTCCTATCGATTCCCATTTCTCAAAAACCAAACTTTCTAATCCCACCAGCAAGCTTTCTTCCACTCCAAGCGATTCCCCTGTTTCAATAACCAAGCTTTGTTCAGCTACTCCAATGGATTCCCCTACTTCAAAAACACCACTTTCTGCTCCTCCACCATTGTCTGCAGCTTCAAGTTCAATCAGCAGCAGCAGTATCTGCAGCGATAGAAGCAGTGAGACCGACGAAAGTCCCTTCTCCTCTCACCGTTTCGAGCTTCAAGATGTAAAGTTTCAGCTACCAATTCAATCCACACCAACTCCAAGTTCCAATTCTCATAGTCATAGATCACTAGCTGTTCTTTCAGGCCATGTTGGTTCTGTTTCATGTTTAGCACTTTGTGGCGAATTCATACTAAGTGCATCACAGGGTAAAGACATCATAGTATGGCAGCAACCGGATTTGCGCCTCTTCGCCAAATTCGGCCAAGGCGATGGATCGATTAAGGCCCTTGTATCCATTGGAAACAAGGTTTTCACTGCTCATCAAGATAGTAGGATCAGAGTTTGGAAGGTTTCAAGGAGTTCAGAGAATGTTTTTAGGCTCGTTGACACGCTTCCGACAACAAAGGACTATTTGGGGAAGTTCATGAAGCAAAGCAACTATGTCCAAACAAGGAGGCACCATAAGAGGCTGTGGATTGAGCATGCTGATAGCATTTCATGTTTAACTGTTCATAATGGTTTGATCTATTCAGGGTCATGGGATAAAACCCTTAAGGTTTGGAACCTTTCGGATTTGAAGTGTTTGGAGTCAATTAAGGCTCATGATGATGCAATCAATGGGTTAGTAGCATGTAGAAGAGGGATTGTGTATTCTGCTTCTGCAGATGGAAAGATCAAAGCTTGGGGAATGGAAAGAGAAAGGGAAGGAGGGAAGTTTAAGAAGAGTAACAAGAATTCACATTGTTTGAAAGGGGTTTTGGAGGGTCATAAAGATGTTTCATTGAATTCTGTGGTTGTTTCTGATGATGGGAAATGGGTCTATGGAGGTGGTTCTGATGGTTATGTTATGGGGTGGGAATGTTCTGAGAGTAGTAGCAGTAGTAGTAGTAGTTGTTGGAAGCTTGTTTCTGAGACAAAGGCACATGAAATGGCTGTTTTATGCATGTGCTTAATTGGTGAGCTTTTATGCAGTGGTTCAGGTCCAGTGAAGTGTTTGCAAGCTTCATGTTCTAATAGAATTGGTGGAGGATTTTTGCTCTATAGTGGAAGCCTTGATAGAAGTGTGAGAGTTTGGTGGGTTCCTAAGTATAATAACAACAATGATATTGAAGAAATAGAGAAGGATAATAACAAGTCTATTGTTTCATGTTAA 1497 0.4142 MNSFLPKPKLSNPLNSPVPKTKLSTSMDSTLSQDPIFSILSKTNLSSVPIDSHFSKTKLSNPTSKLSSTPSDSPVSITKLCSATPMDSPTSKTPLSAPPPLSAASSSISSSSICSDRSSETDESPFSSHRFELQDVKFQLPIQSTPTPSSNSHSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSIKALVSIGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVHNGLIYSGSWDKTLKVWNLSDLKCLESIKAHDDAINGLVACRRGIVYSASADGKIKAWGMEREREGGKFKKSNKNSHCLKGVLEGHKDVSLNSVVVSDDGKWVYGGGSDGYVMGWECSESSSSSSSSCWKLVSETKAHEMAVLCMCLIGELLCSGSGPVKCLQASCSNRIGGGFLLYSGSLDRSVRVWWVPKYNNNNDIEEIEKDNNKSIVSC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00909 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 312 IPR001680 GO:0005515
Adu03g00909 498 ProSitePatterns Trp-Asp (WD) repeats signature. 290 304 IPR019775 -
Adu03g00909 498 Gene3D - 149 250 IPR015943 GO:0005515
Adu03g00909 498 Gene3D - 258 497 IPR015943 GO:0005515
Adu03g00909 498 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 442 488 IPR045182 -
Adu03g00909 498 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 99 441 IPR045182 -
Adu03g00909 498 SMART WD40_4 154 191 IPR001680 GO:0005515
Adu03g00909 498 SMART WD40_4 413 474 IPR001680 GO:0005515
Adu03g00909 498 SMART WD40_4 194 231 IPR001680 GO:0005515
Adu03g00909 498 SMART WD40_4 306 344 IPR001680 GO:0005515
Adu03g00909 498 SMART WD40_4 361 401 IPR001680 GO:0005515
Adu03g00909 498 SMART WD40_4 266 303 IPR001680 GO:0005515
Adu03g00909 498 MobiDBLite consensus disorder prediction 54 126 - -
Adu03g00909 498 Pfam WD domain, G-beta repeat 366 400 IPR001680 GO:0005515
Adu03g00909 498 Pfam WD domain, G-beta repeat 275 303 IPR001680 GO:0005515
Adu03g00909 498 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Adu03g00909 498 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Adu03g00909 498 PRINTS G protein beta WD-40 repeat signature 461 475 IPR020472 -
Adu03g00909 498 SUPERFAMILY WD40 repeat-like 156 478 IPR036322 GO:0005515
Adu03g00909 498 MobiDBLite consensus disorder prediction 54 121 - -
Adu03g00909 498 PANTHER OS01G0946100 PROTEIN 99 441 - -
Adu03g00909 498 PANTHER OS01G0946100 PROTEIN 442 488 - -
Adu03g00909 498 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00909 Adu-Chr3 9057547 9059300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00909 276 473 Miscellaneous Gene Families AT5G08390 24.378 3.25e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00909 - - lang:109353136 597.045