Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00905 ATGTCTTTATTACTACGGCTATTTATCTCACTTTACATTACCCTTGCTTCATTAGGCTTATGTTTTAGCTATTATATAGAGGAATCATTTCATCACACAAATGTTGAACCATACATTGTTCATCATGATGGGAGATTTATCAAGAGAAAACATGAACACTTTGGCCTAATGATGAGAGCTAATAGAGCTAAAAGCCCTCATTTTTCAAGGCCAAGTGGAACAATTAGTGTTAATGACTTCGGAGCCAGAGCTGATGGAAGTGACGACAGTCGGGCATTTGAAAAGGCTTGGAATGAAGCATGTTCTAGTGGGGTCACCCTTGTGGTGCCTGAAAGAAGGACCTACACTCTTAAGCCAATAAGATTTTCAGGTCCATGCAGACCCAACACTGCATTCATGATATATGGAACAATTAAGGCATGGCCAGAGATGTCAGCATATGAAGATGATAGAAAACATTGGATTGTGTTTGATAGTGTCAACAACTTCAGAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAGAATTCATGCAAAACTAATGATAACCTTCCATGCAAAGATGCACCAACTGCTGTGACATTTTACCAATGCAAGAATTTGAGAGTGGCAAATGTGAGATTGAAAGATGCACAACAAATGCATGTGGCATTTGAGAGTTGCTTCAATGTTATAGTTTCCAATGTTCTTGTTAGAGCACCAGGATACAGTCCCAACACTGATGGAATTCATGTTGCTGAAACACAAAACATTGTTATAAGCGACAGTGACATTGGAACAGGTGATGATTGTATTTCAATAGTAAGTGGATCTCAAAATGTTAGAGCTACAGATATCACATGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGATAACTCTGAAGCTGTAGTGTCCAATGTGGTTGTGAACAGAGCCACCTTAACAGGAACAAGTAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCTGGTTATGCAAGGAACATAAAGTTTTTGAACATAGTGATGCAAAATGTGACAAATCCCATAATCATAGATCAAAACTACTGTGATCAAGAAAAGCCATGCCATCAGCAGAACTCAGGAGTTCAACTAAGCAATGTGCTTTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCTATAAAATTTGATTGTAGCAGAACAGTGCCATGCAGAGAAATCTACCTTCAGGATGTGATATTAGAAGCAGAAGATGGTGGCAATGGCGACACGGTTGCCACGTGTCAGAATGTAAGATATGTGAACCGAGGAAAGTTTTTCCCTCAATGCACTCCAATGAGAAATCAAAGGGGAGGAAGATTTTAA 1359 0.3996 MSLLLRLFISLYITLASLGLCFSYYIEESFHHTNVEPYIVHHDGRFIKRKHEHFGLMMRANRAKSPHFSRPSGTISVNDFGARADGSDDSRAFEKAWNEACSSGVTLVVPERRTYTLKPIRFSGPCRPNTAFMIYGTIKAWPEMSAYEDDRKHWIVFDSVNNFRVDGGGTFNGNGKKWWQNSCKTNDNLPCKDAPTAVTFYQCKNLRVANVRLKDAQQMHVAFESCFNVIVSNVLVRAPGYSPNTDGIHVAETQNIVISDSDIGTGDDCISIVSGSQNVRATDITCGPGHGISIGSLGADNSEAVVSNVVVNRATLTGTSNGVRIKTWQGGSGYARNIKFLNIVMQNVTNPIIIDQNYCDQEKPCHQQNSGVQLSNVLYQNIRGTSASEVAIKFDCSRTVPCREIYLQDVILEAEDGGNGDTVATCQNVRYVNRGKFFPQCTPMRNQRGGRF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00905 452 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Adu03g00905 452 PANTHER POLYGALACTURONASE 7 442 - -
Adu03g00905 452 Gene3D - 61 446 IPR012334 -
Adu03g00905 452 PANTHER - 7 442 - -
Adu03g00905 452 SMART pbh1 253 274 IPR006626 -
Adu03g00905 452 SMART pbh1 335 356 IPR006626 -
Adu03g00905 452 SMART pbh1 306 327 IPR006626 -
Adu03g00905 452 SMART pbh1 226 252 IPR006626 -
Adu03g00905 452 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
Adu03g00905 452 SUPERFAMILY Pectin lyase-like 70 443 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00905 Adu-Chr3 8963701 8967015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00905 7 442 Glycoside Hydrolase AT3G07970 54.525 2.44e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00905 K01184 - gmx:732596 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00905 03 8963701 8967015 Adu03g00905 03 8963701 8967015 ECH