Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00890 ATGGCTGTTGAGGCTTCTGACAAACCAGTTTTGCCCAACAAGTTTGATGATGACGATGATGATAATATGCCGTTAACTATAAAACGGTACTCATCGAATAAGAAAAGCCAATTGCATTCAGATGTAAAGAAGTCAACTTCACATAGTCAAGATGGTCATACATACAAGAGGATTTCTGGCGTGCCTTCTTCAAATGGTCAATCTTCTAGCTCTAGTGCACAGAGGGGTAATAATTCCTCATCTGCTAAGGCTTCATCATTAAGATCCCCCCCATCTTCAAGCTCTAATGCACAAAAGGGTAATGCTGCTCCATCTGCTAAGGCTTCACCATTGAGATCACCCACATCTTCAAGCGCTAGTGCACAGAAGGGTAATGCTGCTCCATCTGCTAAGGTGTCACCCTTGAGGTCACCATCATCTTCAAGCTCTAGTGCACAGAAGGGTAATACTGTTCCATCGGCTAAGGCTTCGCCTTTGACATCTCCTTTGAGATCTCCTGTAGGTGTCTCAAAACGACCAAATTCACTTGCCAACTCCACTTCTGCCAAGTTGCCTATGGCAAATTCAAAACCTCCTCATCCAGGAGATAAACCAAAGCCTCTTATTAATCAGAAAGTGTCTGGTGATGTTAAAAAGGAAACAAAATCAATCAAAGATTCTTCAAAGAATTATTCTGAAGATTCAGAGGATGAGGAGGATAATAAACCATTGAGTGCTAGGTTGAAGGTGAACAGTAACCACAACAAAGCAACCCCGGTCATCATCAAGAAGTCTGATGATAATTCTGATTCTGATGATAATGTCCCTTTGTCAACAAAGATAAACTGGAATTCAAACATGGGAACATCCAGTAGTAATTATGACAACTCTGATCAGAAAAAGCCTATTCCAAAAGTTCAGAAAGAGCCACAAAATGGTTCTGGGGCAAGTAATAAAAGACCCATAGATAACAGTAATTCCATGAACTCTTCTGCAAAGAAGTCAAAGATTTCAGAGCCAGCCTCGTCAGTGAAGCCTAAGCAAAGCTCTATGAAAGTTGAGCCAAAGGTAGAGGATGATGATGATGATGTACCTATTTCCCAGAGAATCAAGAAATCGGCCACATCAGCTAATAAATCATCTTCTATAAAACAGGTGACAAAGATCACTAAAGTTAATAAGGCTAGTACCAAATCTTTTAAGAAACAAGCCAAAAACAAGAAGTTGAAAAAATCAGGAAGTGGTTCAGAATATTCCAAATCCACTAAACTTCTTCCTAGCTCTGGTGACGGCCAGAAAAAATGGACAACTTTGGTTCACAATGGCGTCATTTTCCCTCCTCCTTACAAGCCCCATGGGATAAAGATGCGCTACAAGGATCAAGATGTTGATTTAACTCCCGAGCAAGAGGAGGTTGCAACAATGTATGCAGTCATGCTAGATACAGATTACATGCTGAAAGAAAAGTTCAAGGAAAATTTCTGGACTGATTGGCGTAAATTGCTAGGAAAGAATCATGTAATTCAGAATTTGAAAGATTGTGACTTTAGACCAATTTACAACTGGTTCCAAAGTGAAAAGGAAAAGAAAAAACAAATGACTGCAGATGAGAAGAAGGCCTTGAAGGAGGAGAAAACAAAACAAGAAGAGAAATACATGTGGGCCATTGTTGATGGTGTGAAAGAGAAGGTTGGTAATTTCAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGGGAGCATCCTAAGATGGGAAAATTGAAAAGGCGCATTCATCCAAGTGATATCACAATTAATATTGGAAAGGATGCTCCAGTTCCTGAATGTCCTATTCCTGGCGAAAAGTGGAAGGAGATAAGGCATGATGATACAGTTACATGGTTAGCCTTTTGGAATGACCCAATCAATCCAAAGTTATTCAAATACGTGTTTCTAGCAGCTAGTAGTGCCCTAAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAAGCCAGGATGTTGAAGGATTATATAGAGAACATTAGGGCTGCTTACACAAAAGATTTTAAGAGTAAAGATATTACTAAGCAGCAAATCGCTGTTGCTACTTATCTTATTGATAAATTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGTACATTAAAAGTGGAGAATGTGACCAGAGAAGCTCCCAACAAACTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAGAATACAGTTGAGGTTGAGCTTCCTGTTTACGATGCAATTTTGAAGTTCCAAAAAGATAAGCGCCCCGGTGATGATCTTTTTGACAAGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGCCTAACTGCAAAGGTCTTCCGTACATTCAATGCATCTATCACGTTGGATGATATGTTGAATAAGGAAACTAAAGAGGGTGATGTTGGCGAAAAGATTCTTGTTTATCAACATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCACTCGTCACAAATTGAAAGGTTAACAAACAAGATTGGTGAGCTTCAGGCTAGAGAAAAAGATCTCTCAAACCAATGCAAAGATTGA 2610 0.3962 MAVEASDKPVLPNKFDDDDDDNMPLTIKRYSSNKKSQLHSDVKKSTSHSQDGHTYKRISGVPSSNGQSSSSSAQRGNNSSSAKASSLRSPPSSSSNAQKGNAAPSAKASPLRSPTSSSASAQKGNAAPSAKVSPLRSPSSSSSSAQKGNTVPSAKASPLTSPLRSPVGVSKRPNSLANSTSAKLPMANSKPPHPGDKPKPLINQKVSGDVKKETKSIKDSSKNYSEDSEDEEDNKPLSARLKVNSNHNKATPVIIKKSDDNSDSDDNVPLSTKINWNSNMGTSSSNYDNSDQKKPIPKVQKEPQNGSGASNKRPIDNSNSMNSSAKKSKISEPASSVKPKQSSMKVEPKVEDDDDDVPISQRIKKSATSANKSSSIKQVTKITKVNKASTKSFKKQAKNKKLKKSGSGSEYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKMRYKDQDVDLTPEQEEVATMYAVMLDTDYMLKEKFKENFWTDWRKLLGKNHVIQNLKDCDFRPIYNWFQSEKEKKKQMTADEKKALKEEKTKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPSDITINIGKDAPVPECPIPGEKWKEIRHDDTVTWLAFWNDPINPKLFKYVFLAASSALKGQSDKEKYEKARMLKDYIENIRAAYTKDFKSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYDAILKFQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKEGDVGEKILVYQHANKQVAIICNHQRSVSKSHSSQIERLTNKIGELQAREKDLSNQCKD 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00890 869 MobiDBLite consensus disorder prediction 10 25 - -
Adu03g00890 869 MobiDBLite consensus disorder prediction 52 186 - -
Adu03g00890 869 MobiDBLite consensus disorder prediction 362 390 - -
Adu03g00890 869 MobiDBLite consensus disorder prediction 344 361 - -
Adu03g00890 869 Pfam Eukaryotic DNA topoisomerase I, catalytic core 641 866 IPR013500 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 MobiDBLite consensus disorder prediction 303 342 - -
Adu03g00890 869 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 427 638 IPR008336 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 PANTHER DNA TOPOISOMERASE I 196 864 - -
Adu03g00890 869 PANTHER DNA TOPOISOMERASE I 196 864 - -
Adu03g00890 869 Coils Coil 839 866 - -
Adu03g00890 869 Gene3D - 443 526 IPR013034 GO:0003917|GO:0006265
Adu03g00890 869 MobiDBLite consensus disorder prediction 206 238 - -
Adu03g00890 869 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 422 639 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Adu03g00890 869 MobiDBLite consensus disorder prediction 1 424 - -
Adu03g00890 869 CDD Topoisomer_IB_N 427 639 - -
Adu03g00890 869 MobiDBLite consensus disorder prediction 34 51 - -
Adu03g00890 869 SUPERFAMILY DNA breaking-rejoining enzymes 641 844 IPR011010 GO:0003677
Adu03g00890 869 Gene3D Topoisomerase I; Chain A, domain 3 640 837 IPR014711 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 Gene3D DNA Topoisomerase I, domain 2 423 638 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Adu03g00890 869 SMART topeu 567 869 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Adu03g00890 869 PRINTS Eukaryotic DNA topoisomerase I signature 706 720 IPR001631 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 PRINTS Eukaryotic DNA topoisomerase I signature 683 702 IPR001631 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 PRINTS Eukaryotic DNA topoisomerase I signature 786 800 IPR001631 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 PRINTS Eukaryotic DNA topoisomerase I signature 728 744 IPR001631 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 PRINTS Eukaryotic DNA topoisomerase I signature 567 576 IPR001631 GO:0003677|GO:0003917|GO:0006265
Adu03g00890 869 Coils Coil 517 544 - -
Adu03g00890 869 MobiDBLite consensus disorder prediction 408 424 - -
Adu03g00890 869 MobiDBLite consensus disorder prediction 267 293 - -
Adu03g00890 869 CDD Topo_IB_C 647 840 IPR013500 GO:0003677|GO:0003917|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00890 Adu-Chr3 8824496 8832433 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00890 K03163 - gmx:100799837 1060.83