LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu03g00834	ATGATACAGGGATTTTCAGCGTGCAAGCTTCCTGTAACGTCACACACCCTAGCTGCTTCTCTTCACTCACTTTCTCTCTCATCTCTCACTCTCTCTCCTTCTCTGTCGCGCTTCTTCTGGCGGCGTAGCTGCTCAATTTCTCCGGCGGCGGCGTCACATTTACGATTCCGGTCACCTGAAATGGCGGCGAACGATCGGAAAACGCCGAAGCTTCCCGTGAAAGGCAAACGCAACATCCTCATCACAAGCGCCTTGCCTTACGTCAACAACGTCCCTCACCTTGGCAACATCATTGGATGTGTCTTGAGTGCTGACGTGTATGCTCGGTACTGTCGCCTCCGCGGTTACAATGCTATTTACATTTGCGGTACTGATGAGTATGGCACTGCAACAGAGACTAAAGCTATGGAAGAGAATTGCTCTCCCAAGGAGATTTGTGACAAGTACCATGCAATTCATAAGGATATCTATGAATGGTTTGATATAAGTTTTGATGAATTTGGGCGGACTTCAGCCCCACAGCAGACTGAAGTTTGCCAAGCAATTTTTAAAAGATTGTTGGACAACAAATGGCTCTCAGAGAACACAATGCAGCAGCTTTACTGTGACACATGCAAAAGGTTCTTAGCTGATAGGCTTGTGGAGGGTATATGCCCAACTCCAGGGTGTGAGTATGACTCTGCACGAGGAGATCAATGTGAGAAGTGTGGGAAGCTTCTAAATCCAACAGAATTGAAAACTCCCAGGTGTAAGGTTTGTCAAAATACTCCACGAATTCGTGATACAGATCACTTGTTTCTTGAACTTCCCCTGTTGAGAGAGAAATTGGAAAAATACATAGAGGAGGTGAAAGGGTCATGGAGTTCAAATGCTAAGCAAACAACAGCTTCATGGCTTAGAGAAGGATTAAAGCCACGTTGTATTACCAGGGATCTGAAATGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTTTGGTTTGATGCACCTATTGGGTATGTCTCAATCACTGCATGCTACACAACTGAATGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGTTGTATCAATTTATGGGCAAGGACAATGTGCCTTTCCACACTGTGATGTTTCCATCTACTCTTCTTGGAACTGGTGAAAATTGGACCTTGATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCTAAAAGCAAAGGCATAGGAGTATTTGGTAATGATGCAAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACTTACTCACAAATAGGCCCGAGGTATCTGATACATTATTTACATGGCCTGATTTGCAAGCAAAATTAAATAGTGAGCTGCTGAATAATTTGGGCAACTTTATCAACCGAGTTTTGAGCTTTATTGCCAAACCTGAAGGTCAAGGATATGATTCTGCTATACCTGCTCTTGCTGATGGTCTAAGTAGTGAATCCCATGATCCTACCAAAAAATTGGCTGAAAGAATTTCTGCATACGTGGACCAGTACATAGAGGAAATGGAGAAGGTTAGACTGAAACAAGGATTGAAAATCGCAATGGCCATATCCACCGAGGGGAATGGATATCTGCAGGAATGTGAATTTTGGCGCCTTTACAAGGAAAACAAACCTCTTTGTTCTCTTGTTATGAAAACTGCGGTTGGGGTTGTATATATTCTTGCATGTTTATTGGAACCCTTTATGCCGTCATTAACACAGGAGGTATTTAAGCAGCTAAATTTGTCTACGGAATTGCATCTTTCGCTTTGTGACGAAAAAGGAGATGTTAACAAGGCAAAGATACCTTGGGAGATCCTAAATGCTGGCCATAAAATTGGGAAACCGCAGCCACTGTTCAAGGAACTGAAAGATGAAGACGTAGAGTTCTACAGGAAGAAATTTGCGGGAAGTCAAGCTGATAGGATCTTGCGTGCAGAGGCTGAAGCTGGAAAAGTCGCCGAGGAACTGAAGAAGACAAAAATTTCAGATGGTGGAAAGAAAAAATCATCGTCAAAGTCATCAAATGATGGCAAAAACAAAGCTGCTCCTGAGCCAGAAATTACCATCAGCAGGCTTGATATACGTGTTGGCCTTATTAAGAAAGCTCAAAAACATCCCGATGCTGATTCACTATACGTGGAAGAGATTGATGTTGGCGAAGAACAGCCCAGAACAGTTGTTAGTGGGCTTGTCAAGTATATACCACTTGAAGAAATGCAGAATCGAAAGGTCTGTGTTCTCTGCAACCTAAAGCCAGCAACCATGAGGGGAATTAAATCCCAAGCAATGGTTCTAGCTGCTTCGAATAGTGATCACACCAAGGTGGAGTTGGTTGAGCCACCCAGTTCAGCAAAAGTTGGAGAAAGAGTCACATTCCCAGGGTTTGAAGGTAATCCTGATGAACTCTTGAACCCAAAGAAGAAAGTCTGGGAAACATTGCAAGTGGATCTGCAAAGTAATGGAGAACTAGTGGCATGCTACAAGGATGTTCCACTCACCACATCAGCTGGTGTTTGCAAGGTCTCATCCATACAAAATGGATCAATTAGGTAG	2589	0.4299	MIQGFSACKLPVTSHTLAASLHSLSLSSLTLSPSLSRFFWRRSCSISPAAASHLRFRSPEMAANDRKTPKLPVKGKRNILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHKDIYEWFDISFDEFGRTSAPQQTEVCQAIFKRLLDNKWLSENTMQQLYCDTCKRFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKTPRCKVCQNTPRIRDTDHLFLELPLLREKLEKYIEEVKGSWSSNAKQTTASWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITACYTTEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPEGQGYDSAIPALADGLSSESHDPTKKLAERISAYVDQYIEEMEKVRLKQGLKIAMAISTEGNGYLQECEFWRLYKENKPLCSLVMKTAVGVVYILACLLEPFMPSLTQEVFKQLNLSTELHLSLCDEKGDVNKAKIPWEILNAGHKIGKPQPLFKELKDEDVEFYRKKFAGSQADRILRAEAEAGKVAEELKKTKISDGGKKKSSSKSSNDGKNKAAPEPEITISRLDIRVGLIKKAQKHPDADSLYVEEIDVGEEQPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNSDHTKVELVEPPSSAKVGERVTFPGFEGNPDELLNPKKKVWETLQVDLQSNGELVACYKDVPLTTSAGVCKVSSIQNGSIR	862

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu03g00834	862	Pfam	Anticodon binding domain of methionyl tRNA ligase	499	650	IPR041872	-
Adu03g00834	862	CDD	Anticodon_Ia_Met	455	591	IPR041872	-
Adu03g00834	862	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	214	250	IPR029038	-
Adu03g00834	862	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	86	97	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Adu03g00834	862	PANTHER	METHIONINE--TRNA LIGASE	65	862	IPR023458	GO:0004825
Adu03g00834	862	MobiDBLite	consensus disorder prediction	669	686	-	-
Adu03g00834	862	TIGRFAM	metG: methionine--tRNA ligase	79	615	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Adu03g00834	862	CDD	tRNA_bind_EMAP-II_like	699	803	-	-
Adu03g00834	862	SUPERFAMILY	Nucleic acid-binding proteins	701	861	IPR012340	-
Adu03g00834	862	Gene3D	-	699	862	IPR012340	-
Adu03g00834	862	Pfam	tRNA synthetases class I (M)	79	471	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Adu03g00834	862	Gene3D	HUPs	78	459	IPR014729	-
Adu03g00834	862	MobiDBLite	consensus disorder prediction	669	698	-	-
Adu03g00834	862	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	463	647	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Adu03g00834	862	Gene3D	-	214	250	IPR029038	-
Adu03g00834	862	CDD	MetRS_core	78	446	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	Pfam	Putative tRNA binding domain	706	801	IPR002547	GO:0000049
Adu03g00834	862	PRINTS	Methionyl-tRNA synthetase signature	81	94	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	PRINTS	Methionyl-tRNA synthetase signature	114	128	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	PRINTS	Methionyl-tRNA synthetase signature	162	173	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	PRINTS	Methionyl-tRNA synthetase signature	328	339	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	PRINTS	Methionyl-tRNA synthetase signature	363	378	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	PRINTS	Methionyl-tRNA synthetase signature	458	469	IPR033911	GO:0004825\|GO:0006431
Adu03g00834	862	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	65	862	-	-
Adu03g00834	862	SUPERFAMILY	Nucleotidylyl transferase	76	458	-	-
Adu03g00834	862	Gene3D	-	460	633	-	-
Adu03g00834	862	Hamap	Methionine--tRNA ligase [metG].	77	645	IPR023458	GO:0004825
Adu03g00834	862	ProSiteProfiles	tRNA-binding domain profile.	700	803	IPR002547	GO:0000049

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu03g00834	Adu-Chr3	8119277	8125584	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu03g00834	K01874		-	gmx:100809861	1404.42