Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00616 ATGAGTGCATCAAGGTTCATAAAGTGTGTCACTGTTGGTGATGGTGCTGTTGGCAAGACTTATTTTTCTTGCAATAATCTTGTGTTTCTTTGTATCCATTGGCAACAGGATTATGTTCCAACTGTCTTTGACAATTTCAGCGCAAATGTGGTTGTGGATGGGAGCACTGTGAATTTGGGTTTGTGGGACACTGCTGGCCAAGAAGATTACAATAGATTAAGACCTTTAAGCTATCGAGGAGCTGATGTATTCCTGCTAGCATTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAGTTTTTTCAAGATCATCCTGGTGCAGCGCCTATCACCACAGTGCAGGGTGAGGAACTGAGAAAACTTATCGGTGCTCCAGTTTACATCGAATGTAGTTCAAAAACACAGCAGAATGTGAAGGCTGTTTTTGATGCGGCCATCAAAGTAGTTCTCCAGCCTCCAAAGCAGAAGAAAAAGAAGAGAAAGGGTCAAAAAACCTGTTCCATATTGTGA 603 0.4196 MSASRFIKCVTVGDGAVGKTYFSCNNLVFLCIHWQQDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAAPITTVQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKGQKTCSIL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00616 200 PRINTS Transforming protein P21 ras signature 7 28 - -
Adu03g00616 200 PRINTS Transforming protein P21 ras signature 112 125 - -
Adu03g00616 200 PRINTS Transforming protein P21 ras signature 158 180 - -
Adu03g00616 200 PRINTS Transforming protein P21 ras signature 50 72 - -
Adu03g00616 200 PRINTS Transforming protein P21 ras signature 33 49 - -
Adu03g00616 200 ProSiteProfiles small GTPase Ras family profile. 1 200 IPR001806 GO:0003924|GO:0005525
Adu03g00616 200 PANTHER RHO FAMILY GTPASE 1 200 IPR003578 GO:0005525|GO:0007264
Adu03g00616 200 ProSiteProfiles small GTPase Rab1 family profile. 2 200 - -
Adu03g00616 200 SMART rho_sub_3 9 183 IPR001806 GO:0003924|GO:0005525
Adu03g00616 200 Pfam Ras family 8 181 IPR001806 GO:0003924|GO:0005525
Adu03g00616 200 SMART ras_sub_4 4 183 - -
Adu03g00616 200 ProSiteProfiles small GTPase Rho family profile. 1 180 - -
Adu03g00616 200 TIGRFAM small_GTP: small GTP-binding protein domain 7 174 IPR005225 GO:0005525
Adu03g00616 200 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 200 - -
Adu03g00616 200 SMART rab_sub_5 7 183 - -
Adu03g00616 200 CDD Rop_like 6 181 - -
Adu03g00616 200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 181 IPR027417 -
Adu03g00616 200 Gene3D - 5 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00616 Adu-Chr3 5636759 5639054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00616 7 183 EF-hand Containing Proteins AT5G27540 25.989 5.79e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00616 K04392 - gmx:100785464 343.969