Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00612 ATGGCGGAAGAAGAGTACGATGATGATGTCGAAGAAGAGTTCTCCGTTTGGAAGAGGAACACGCCATTGTTGTACGATCTTGTCATTTCGCACCCTCTCCCATGGCCTTCTCTCACTGTTCATTGGCTCCATTCTTCTCCACAACCCCATTCTCATCCTTCCTTCAATCTCCACAAGATCCTTTACGCAACTCACACTTCAAATTCCGAACCGAACTACCTCATCCTCGCCAATGTTGCTCTTCCTGCCAACCCATCACAGCCTGTCGCTGCTGCTGTTGACGCTGAAAACCCGGTTCTGCCCAAGGTGGAGGTTACCCAAAGGATTATGGTTGATGGGGAGGTGAATAGGGCGAGGAGTATGCCCCAGAACCCTAGTGTTGTTGCTTCCAAGACTTGTGGTTCTGAGGTTTATGTGTTTGATGTTGAGAAGCAGCATGGAAAGGAACAAGGTGGTGGTTGTGATCCTGATTTGAGGTTGAGGGGTCATGACAAAGAAGGGTATGGTTTGTCTTGGAGCCCTTTTAAGAAAGGCTATCTTTTGAGTGGCTCCCATGACTCAAAGATTTGCATGTGGGATGTGTTAGCTGCGGATAAAGATAATGTGCTTGATGCGATCCATGTTTATGAGGCACATGATGGCGTGGTTGGGGATGTATCCTGGCATTCAAAGCACGAGAGTTTATTTGGCTCTGTTGGAGATGATTGCAAATTAATCATTTGGGACTTGAGGACAAATAAGGCCCAGCAATCAGTCAAGGCACATGAGAATGAGGTGAACTTTATTTCTTTCAATCCATATAATGAATGGATTGTAGCTACAGCATCGTCAGACACCACCATTGCCCTCTTTGATACAAGGAAACTGGCGGAGCCGCTGCATGTTTTAAGTAGCCACACCGATGAGGTGTACCAGGTGGAGTGGGATCCTAATCATGAGACCGTGTTGGCATCTTCAGGTGCTGACAGAAGGCTGAACGTTTGGGACCTTAGCAGAGTCGGGGATGAGCAGAATGAAGGGGACGGTGATGGTGGCCCTCCTGAGCTACTCTTCTCTCATGGTGGTCACAAGGGGAAGATATCGGACTTTTCGTGGAACAAGAATCAGCCATGGGTTATCTCAAGTGTGGCTGAGGACAATTCTTTCCATGTGTGGCAAATGGCTGAGAATATATACAATGAAGATGGTGATGAAGAAGATATCTGGACAGCTGATGATCAAAACTAA 1227 0.4711 MAEEEYDDDVEEEFSVWKRNTPLLYDLVISHPLPWPSLTVHWLHSSPQPHSHPSFNLHKILYATHTSNSEPNYLILANVALPANPSQPVAAAVDAENPVLPKVEVTQRIMVDGEVNRARSMPQNPSVVASKTCGSEVYVFDVEKQHGKEQGGGCDPDLRLRGHDKEGYGLSWSPFKKGYLLSGSHDSKICMWDVLAADKDNVLDAIHVYEAHDGVVGDVSWHSKHESLFGSVGDDCKLIIWDLRTNKAQQSVKAHENEVNFISFNPYNEWIVATASSDTTIALFDTRKLAEPLHVLSSHTDEVYQVEWDPNHETVLASSGADRRLNVWDLSRVGDEQNEGDGDGGPPELLFSHGGHKGKISDFSWNKNQPWVISSVAEDNSFHVWQMAENIYNEDGDEEDIWTADDQN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00612 408 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 12 82 IPR022052 -
Adu03g00612 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 194 - -
Adu03g00612 408 SMART WD40_4 346 386 IPR001680 GO:0005515
Adu03g00612 408 SMART WD40_4 289 329 IPR001680 GO:0005515
Adu03g00612 408 SMART WD40_4 202 242 IPR001680 GO:0005515
Adu03g00612 408 SMART WD40_4 245 285 IPR001680 GO:0005515
Adu03g00612 408 SMART WD40_4 153 193 IPR001680 GO:0005515
Adu03g00612 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 287 IPR001680 GO:0005515
Adu03g00612 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Adu03g00612 408 Gene3D - 1 405 IPR015943 GO:0005515
Adu03g00612 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 194 IPR001680 GO:0005515
Adu03g00612 408 SUPERFAMILY WD40 repeat-like 112 390 IPR036322 GO:0005515
Adu03g00612 408 PANTHER WD40 REPEAT FAMILY 3 400 - -
Adu03g00612 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 331 IPR001680 GO:0005515
Adu03g00612 408 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Adu03g00612 408 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Adu03g00612 408 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Adu03g00612 408 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Adu03g00612 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 331 - -
Adu03g00612 408 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Adu03g00612 408 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 3 400 - -
Adu03g00612 408 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Adu03g00612 408 Pfam WD domain, G-beta repeat 291 329 IPR001680 GO:0005515
Adu03g00612 408 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Adu03g00612 408 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00612 Adu-Chr3 5593367 5595906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00612 206 388 Miscellaneous Gene Families AT5G08390 22.404 1.85e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00612 K10752 - gmx:100791834 644.039