Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00536 ATGGCGGCGAAGAAGGCCGAGAAGCAGATCCCGTCGGAGCCGCACTGGAGATTCTGCTACACCATGCTCCACAAGGTTTCTAGAAGCTTTGCACTCGTCATTCAGCAGCTCGGTACCGAGCTTCGCAACGCCGTTTGCATATTTTATTTGGTTCTTCGAGCGTTGGATACCGTTGAGGATGATACCAGCATAGATACAGATGTCAAGGTGCCAATACTAATAGCTTTTCATAATCATATATATGATCGTGATTGGCACTTTTCATGTGGAACAAACAACTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGGGCTACCAAGAAGCAATTGAGGATATTACGAAAAGGATGGGTGCAGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTACGATGAGTATTGTCACTATGTGGCAGGACTTGTTGGGTTAGGTTTATCAAAGCTTTTCCATGCCTCTGGTTCAGAAGATCTTGCTCCAGATGACCTCTCCAATTCAATGGGCTTGTTTCTGCAGAAAGCAAACATTATTCGAGATTATTTGGAAGACATCAATGAGATCCCCAAGTCACGAATGTTTTGGCCTCGGCAGATCTGGAGTAAATATGTTAACAAACTTGAGGAGCTGAAATATTCGGAGAATTCCATCAAGGCAGTGCAATGCTTAAATGACATGGTCACTAACGCTCTGATGCATGCCGAAGATTCTTTAAAGTACATGTCTGCATTACGAGACCTGGCTATATTTCGCTTTTGTGCTATTCCCCAGATAATGGCAATTGGGACGATTGCATTGTGCTATAACAACATCGAAGTCTTCAGAGGTGTAGTAAAAATGAGGCGTGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACAATGGCTGATGTTTATGGTGCATTCTTTGATTTTGCTTGTATATTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCTACAAAAACATTGAGCAGGCTGCAATCTATACAGAAGACTTGCAGAGAATCTGGTCTCCTAAGTAAAAGGAAATCTTACATTGTGAATGGGAACGGATATAGCTCCACCATGATCTTCATCCTGATCATCACGTTTTCCATCCTTTTTGCATATCTCTCTGCTAACCGCCAAAACATTTAG 1176 0.4201 MAAKKAEKQIPSEPHWRFCYTMLHKVSRSFALVIQQLGTELRNAVCIFYLVLRALDTVEDDTSIDTDVKVPILIAFHNHIYDRDWHFSCGTNNYKVLMDQFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLAPDDLSNSMGLFLQKANIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEELKYSENSIKAVQCLNDMVTNALMHAEDSLKYMSALRDLAIFRFCAIPQIMAIGTIALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFACILESKVDKNDPNATKTLSRLQSIQKTCRESGLLSKRKSYIVNGNGYSSTMIFILIITFSILFAYLSANRQNI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00536 391 CDD Trans_IPPS_HH 17 299 IPR033904 GO:0004311
Adu03g00536 391 Pfam Squalene/phytoene synthase 24 294 IPR002060 GO:0009058
Adu03g00536 391 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 388 - -
Adu03g00536 391 ProSitePatterns Squalene and phytoene synthases signature 2. 180 208 IPR019845 GO:0016765
Adu03g00536 391 SFLD Squalene/Phytoene Synthase Like 15 304 IPR002060 GO:0009058
Adu03g00536 391 Gene3D Farnesyl Diphosphate Synthase 13 350 IPR008949 -
Adu03g00536 391 SFLD Isoprenoid Synthase Type I 15 304 - -
Adu03g00536 391 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 388 IPR044844 GO:0004311
Adu03g00536 391 ProSitePatterns Squalene and phytoene synthases signature 1. 147 162 IPR019845 GO:0016765
Adu03g00536 391 SUPERFAMILY Terpenoid synthases 15 346 IPR008949 -
Adu03g00536 391 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 15 346 IPR006449 GO:0004310|GO:0008610
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00536 Adu-Chr3 5014809 5021632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00536 K00801 - gmx:547940 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00536 03 5014809 5021632 Adu03g00536 03 5014809 5021632 ECH