Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00378 ATGTTTGACCGCAATGGAGACGGCCGAATCTCGAAAAAGGAACTCAACGATTCTTTGGAAAAGCTTGGGATCTATATCCCGGACAAAGAGCTTGACCAAATGATCGAAAAAATCGACGTTAATGGAGACGGTTGGGTGGATATGGAAGAGTTTGGCGAACTCTACATGTCTATAATGGACGAACGCGAGGAGCGCGACGAGGAGGAAGACATGAAGGAAGCCTTCAACGTATTCGATCAGAACGGAGACGGTTACATCACGGTGGAGGAGCTTAGATCGGTACTTTCTTCCTTGGGGCTGAAGCAAGGGAGGACGGTGGAGGAGTGCCGGAAGATGATAATGAAGGTGGACCGCGACGGCGACGGCATGGTTGATTACAAAGAATTCAAGCAGATGATGAAAGGAGGAGGATTCAGTGCTCTTGGTTCAGATTAA 435 0.4851 MFDRNGDGRISKKELNDSLEKLGIYIPDKELDQMIEKIDVNGDGWVDMEEFGELYMSIMDEREERDEEEDMKEAFNVFDQNGDGYITVEELRSVLSSLGLKQGRTVEECRKMIMKVDRDGDGMVDYKEFKQMMKGGGFSALGSD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00378 144 SUPERFAMILY EF-hand 1 136 IPR011992 -
Adu03g00378 144 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Adu03g00378 144 ProSitePatterns EF-hand calcium-binding domain. 39 51 IPR018247 -
Adu03g00378 144 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Adu03g00378 144 CDD EFh 72 134 IPR002048 GO:0005509
Adu03g00378 144 ProSiteProfiles EF-hand calcium-binding domain profile. 26 61 IPR002048 GO:0005509
Adu03g00378 144 ProSitePatterns EF-hand calcium-binding domain. 3 15 IPR018247 -
Adu03g00378 144 ProSiteProfiles EF-hand calcium-binding domain profile. 1 25 IPR002048 GO:0005509
Adu03g00378 144 Pfam EF-hand domain pair 68 134 IPR002048 GO:0005509
Adu03g00378 144 Pfam EF-hand domain pair 1 55 IPR002048 GO:0005509
Adu03g00378 144 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Adu03g00378 144 PANTHER CALMODULIN-LIKE PROTEIN 3 1 142 - -
Adu03g00378 144 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 142 - -
Adu03g00378 144 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Adu03g00378 144 Gene3D - 1 60 - -
Adu03g00378 144 Gene3D - 61 136 - -
Adu03g00378 144 SMART efh_1 30 58 IPR002048 GO:0005509
Adu03g00378 144 SMART efh_1 70 98 IPR002048 GO:0005509
Adu03g00378 144 SMART efh_1 108 136 IPR002048 GO:0005509
Adu03g00378 144 SMART efh_1 1 22 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00378 Adu-Chr3 3451338 3451772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g00378 1 144 EF-hand Containing Proteins AT3G07490 75.694 1.58e-70 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00378 K13448 - qsu:112002913 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01136 08 20214875 20216270 Adu03g00378 03 3451338 3451772 PCT