Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00213 ATGGATAGAAACAGAGCGAAAGGCATTACTTTCACGAAGGAACCGTACATCGAAGATGCAGGGCCACGCATTGTGAAGAGCATGAAGTTCAGTTCCTTATCTGACTCTGAGATTGGAAAACTCGCTGAAGTTCAAGGTCCTGCTAATAAGGAGCTTATTTGCGCGACATGCGGTGGTGACTTTGCTCATTGTCCGGGCCACTTCGGATACTTAACTCTTGCCCTTCCCATCTTCAATATTGGATTCTTGGGTACCATTGTGGAAATATTGAAGTCCATTTGCAAGTGCTGTGCTCGAATTCTTCTCAACGAAGATATACGTAAAGATCGTTTGAAAAAAATGAGAAGACCCAGAATTGATGCACTGGCGAAGGCTGAATTAGCGAAAAAGGTTGTAGAGGCATGCAGCAAAGTATCAATGTGCTCGAGATGTGGATATAAGAATGGTTCGGTAAAGAAGCTTGTGGGTTCGCTAAAAATCACTCATGATCGCTCAAAATGTAATGATAGTAGCATTGAAGAATTTCAAACAGCACTTTCACATGCAAGAGAATCTAGATTGACCAGCGCTGTGGATACTCATATTCTAAACCCATTCCAAGCTTTATCCCTGTTTAAAAGGATGCTGGATGAGGACTGTGAATTACTTTATCTTGCTGAAAGACCGGAGAAACTCATCATTACAAACATTGCAGTGCCCCCATTGGCTATGCGACCTTCAGTTATAATGGATGGATCACAGAGCAATGAAAATGATGTAACAGAGAGGCTAAAGCAAATAGTCCAAGCTAATGCTCATGTGCGCCAAGAATTAGAAGAAATTGCTTCATTAAGATCTCTGGATGGTTGGGAAACGCTTCAATTTGAGGCTGCTCAATTCATAAATAGTGAGGTTCGTGGTATACCATACCACCAGCAACGGGAAAAGACAATGGCGGGTTTAGTTCAACGCCTTAAAGGGAAGCAGGGACGTTTTCGTGGCAACTTATCTGGGAAACGTGTTGAATTTACTGGCAGGACAGTTATTTCACCGGATCCTAATTTAAAGATTACTGAGGTTGCAATACCCATGCTTATGGCTCGTATATTGAGTTATCCTGAACGTGTTTCACATCACAACATTGAAAAGCTGAGACAGTGTATAAGAAATGGTCCTGATAAGTATCCTGGTGCAAGACAGTATAGAGATGCCTCGGGTTCCACATGGTTTTTGCTAGTTCCTCACAGGAAGCGCTTTGCAGACCAGCTGAAATTTGGTGATATAGTTGATCGTCATTTGGAAGATGGCGACATTATTCTTTTTAATAGGCAGCCAAGCTTGCATCGGATGTCTATAATGTGTCATAGGGCGAGGATCATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTTTGCAACCCATATAATGCTGATTTTGATGGTGATGAGATGAACTTACATGTGCCACAGACTGAGGAAGCACGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAATAATCTGTGCACACCAAAAAATGGCGAAATTTTGGTTGCCTCTACTCAAGACTTCTTAACCTCTTCCTATCTCATAACTAGAAAAGATACATTTTATGATCGTTCAACCTTTTCACTTATTTGCTCATACATGGGGGATGGCATGGATCTTGTTGATCTGCCAACTCCCGCAATTATTAAGCCAGTTGAGCTTTGGAGTGGTAAACAGTTATTTAGCATTCTATTGCGCCCAAATGCAAATGTGAGGGTCTATGTGAATCTTACTGTTAAGGAGAAAATATACAGTACAAAGCTTGATGACAAGAAACGAGAAATGAAAACGATGTGCCCAAGTGATGGGTTTGTCTATTTTCGCAATAGTGAGTTGATATCAGGACAACTTGGAAAGGTGACTTTAGGGAATGGAAATAAGGATGGTCTTTTCTCTGTGCTACTAAGAGACTATAAACCACATGCTGCTGCTGCTTGCATGAATCGTGTAGCTAAATTGAGTGCTCGATGGATCGGAAATCATGGGTTCTCAATTGGCATTGATGATGTCCAACCAAAAGAGGTTTTGATAGAACAGAAAGATAAAACAATATCTGATAATTATAAAAAATGTGATGATTTTATAGCAGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAGACATTAGAAACTCTGATAACTGGTGTCTTGAATGGTATACGAGATACAGCAGGAAAGGTTTGCATGCAAACCCTACACTGGAGAAATAGCCCACTGATCATGTCGCAGTGTGGCTCCAAAGGATCTCCAATTAATATCAGTCAGATGGTTGCTTGTGTGGGTCAACAATCAGTTGGAGGTCGTCGTGCTCCTAATGGTTTCGTGGACCGTAGTCTTCCTCATTTCCCTAGAAAAGCAAAAACCCCAGCCGCTAAAGGTTTTGTTGCCGAATCTTTTTACAGTGGATTGTCTGCTACTGAGTTTTTCTTCCACACAATGGGAGGGCGTGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACATGTCTCGTAGATTAATGAAATGTCTGGAGGATTTGTTCTTACAGTATGATTACACTGTAAGAAATGCTGCTGGTGGTATTGTTCAATTTTGTTATGGAGATGATGGCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCACTAAATTTTGACCGGCTGTTTTTGAGAAGCCAGGCCATATGTCCAAGTGATGAAGACGATGATATCTTGTCTCCCTCAGATGTGCATGAAGTAGTTCAAAGGAAGCTTTCAGAAGTTGGTATGTGCAAGTTAGTCAAGCAAGAGGCTTCAGCGGATGATTCCTCTGCCGGCTTCGTAAATTCTCTTCAATCCTTTGTCAAAGGGAAAATAGAATCAACAGAACCTTCCACCAAAGAGGATTCTGAAAAGCTGAAAAAGTTTATTCAGAGGATTTCTGGGATTACTCGCAGACAACTAGAGGTTTTTCTCGATATTTGTTTATCTCGTTACCATTCAAAAAAAATTGAGGCTGGAACTCCCATCGGAGCAATTGGAGCTCATAGTATTGGAGAGCCTGGAACCCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTGACCCTTGGAGTTCCTCGCATCAAAGAAATTATAAATGGATCCAAAAAGATCAGCACACCAATCATCACTGCAATACTTGAGACAGATAATAATCCAAATACCGCAAGGATAGTAAAAGGTCGCATAGAAAAAACCAACTTAGGCCAGGTCGCAAAGAGTATAAAAGTTGTTATAACTTCAAGATCAGCATCAATTGTCATCTCGCTTGACATGGAAAGAATTCGAGATGCACATCTGCATGTAGATGCCAATATTGTAAAAGAGTCGATTTTGCATACTCCAAAACTAAAATTGAAGCAAGACAATGTTAAGATCTTAGATATCAAAAAGCTCAGGATTGTTCCCCCAGATGGTGATAGAAGTAAAATCCAATTTCAACTTAACCATCTTAAAAATTTGCTTCCTTCAGTTGTTGTGAAGGGAATTAAAACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGAGGCAAAAACTGAAAAGTTCAAATTACTGGTGGAAGGCACGGGTCTTCTAGATGTTATGGGAATTGAAGGGGTTGATGGACTTAATACTCTTAGTAATCATATAGATGAAGTGAGTGAGTCTCTGGGAATTGAAGCTGCTAGAAGGACTATCATTGAGGAGATAAAAGTAGTTATGGGAAGTCACGGTATGAGTATAGACATACGCCATATGATGCTTCTAGCAGATGTGATGACTGTTATGGGCAGAGTCCTTGGAATAACCAGATTCGGAATTCAAAAGATGGGCAAAAGTGTATTGATGCTTGCGTCTTTTGAGAGGACATCGGATCATCTTTTCAATGCAGCGGTACATGGGACAGAGGACCTGATTGAAGGAGTGAGTGAACGTGTAATCATGGGTATACCGATCCAGATAGGCACCGGAATGATCAAGGTCAAACAAAGGTTGAGTCCTCCAGAGTTGCTTCAAGGAACTCCTCCTATTCTATCTTATAGTGCAATTGAAGGGTTTGCGTTGACTGTTAAGATTAGCTAG 4143 0.4098 MDRNRAKGITFTKEPYIEDAGPRIVKSMKFSSLSDSEIGKLAEVQGPANKELICATCGGDFAHCPGHFGYLTLALPIFNIGFLGTIVEILKSICKCCARILLNEDIRKDRLKKMRRPRIDALAKAELAKKVVEACSKVSMCSRCGYKNGSVKKLVGSLKITHDRSKCNDSSIEEFQTALSHARESRLTSAVDTHILNPFQALSLFKRMLDEDCELLYLAERPEKLIITNIAVPPLAMRPSVIMDGSQSNENDVTERLKQIVQANAHVRQELEEIASLRSLDGWETLQFEAAQFINSEVRGIPYHQQREKTMAGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPMLMARILSYPERVSHHNIEKLRQCIRNGPDKYPGARQYRDASGSTWFLLVPHRKRFADQLKFGDIVDRHLEDGDIILFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSTFSLICSYMGDGMDLVDLPTPAIIKPVELWSGKQLFSILLRPNANVRVYVNLTVKEKIYSTKLDDKKREMKTMCPSDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKPHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPKEVLIEQKDKTISDNYKKCDDFIAAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFVDRSLPHFPRKAKTPAAKGFVAESFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKCLEDLFLQYDYTVRNAAGGIVQFCYGDDGMDPAGMEGKDGKPLNFDRLFLRSQAICPSDEDDDILSPSDVHEVVQRKLSEVGMCKLVKQEASADDSSAGFVNSLQSFVKGKIESTEPSTKEDSEKLKKFIQRISGITRRQLEVFLDICLSRYHSKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGSKKISTPIITAILETDNNPNTARIVKGRIEKTNLGQVAKSIKVVITSRSASIVISLDMERIRDAHLHVDANIVKESILHTPKLKLKQDNVKILDIKKLRIVPPDGDRSKIQFQLNHLKNLLPSVVVKGIKTAERVVISKEEDKEAKTEKFKLLVEGTGLLDVMGIEGVDGLNTLSNHIDEVSESLGIEAARRTIIEEIKVVMGSHGMSIDIRHMMLLADVMTVMGRVLGITRFGIQKMGKSVLMLASFERTSDHLFNAAVHGTEDLIEGVSERVIMGIPIQIGTGMIKVKQRLSPPELLQGTPPILSYSAIEGFALTVKIS 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00213 1380 Gene3D - 857 907 - -
Adu03g00213 1380 Gene3D RNA polymerase Rpb1, domain 3 505 678 IPR042102 -
Adu03g00213 1380 Pfam RNA polymerase Rpb1, domain 5 817 1300 IPR007081 GO:0003677|GO:0003899|GO:0006351
Adu03g00213 1380 Gene3D - 322 504 - -
Adu03g00213 1380 Gene3D - 1298 1354 - -
Adu03g00213 1380 Gene3D - 797 855 - -
Adu03g00213 1380 Gene3D RNA polymerase II, clamp domain 24 116 IPR044893 -
Adu03g00213 1380 Pfam RNA polymerase Rpb1, domain 4 708 810 IPR007083 GO:0003677|GO:0003899|GO:0006351
Adu03g00213 1380 SMART rpolaneu7 223 525 IPR006592 GO:0003677|GO:0003899|GO:0006351
Adu03g00213 1380 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1352 IPR045867 GO:0003899|GO:0006351
Adu03g00213 1380 Pfam RNA polymerase Rpb1, domain 2 331 497 IPR000722 GO:0003677|GO:0003899|GO:0006351
Adu03g00213 1380 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1350 - -
Adu03g00213 1380 Gene3D RNA polymerase ii 364 424 - -
Adu03g00213 1380 Pfam RNA polymerase Rpb1, domain 1 29 329 IPR007080 GO:0003677|GO:0003899|GO:0006351
Adu03g00213 1380 CDD RNAP_III_RPC1_N 33 867 IPR035697 -
Adu03g00213 1380 CDD RNAP_III_Rpc1_C 1004 1346 IPR035698 -
Adu03g00213 1380 Gene3D - 679 796 IPR038120 -
Adu03g00213 1380 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1352 - -
Adu03g00213 1380 Pfam RNA polymerase Rpb1, domain 3 500 679 IPR007066 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00213 Adu-Chr3 2036556 2048754 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00213 K03018 - gmx:100811292 2087.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00213 03 2036556 2048754 Adu03g00213 03 2036556 2048754 ECH