Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu03g00195 | ATGGCGGCGTCACGGATCATATCGCATCCTCACCGTCCATTCTCTCCTCCGCCATCTCAACCCCATGCGCACTCCTCCATCACCCTCAACTTCACACTCCACCCACCAAAACGGTGCCGTTTAGCGTGCGTTCTTCGCGCCTCGCTTAAGGAGAACGATCTCAACGATAAAGCTGACCTATTTGCTCTTCCCCGGCCTTTAACTTCCACTCAGCTCTCCGATTCAGTTTCCGATGGTCCACGTCTTCAAGTTGCATATCAGGGGGTTCCTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTTCCATGTCCACAATTTGAGAATGCATTTCAAAAAGTTGAGAGGTGGCTTGTGGATAGAGCAGTTTTGCCAATTGAGAATTCTCTAGGAGGGAGCATCCACAGAAATTATGACCTTCTACTCAGGCACAGGTTGCATATAGTGGGAGAAGTGAAATATGCAGTTCATCATTGTCTGATGGCCAATCATGGTGTTAAACTCGAGGATCTGAAGCGTGTTCTTAGTCATCCACAGGCTCTTGCACAATGTGAGCACACACTGACGAAGTGGGGATTGGTTAGGGAAGCAGTCGATGATACAGCTGGTGCTGCGCAGTATATTGCCATGCATGGAGTAAAAGATGCAGGAGCGGTTGCTAGTTCTGCTGCTGCAAAGATTTATGGCTTGAATATACTTGCCCAAGACATTCAGGATGATTGTGATAATGTCACCCGATTTCTAATGTTAGCACGAGAACCTATAATTCCCGGTACAGATAGGCCATTTAAGACAAGCATAGTTTTTTCGTTGGAAGAGGGTCCGGGAATACTTTTCAAGGCTCTTGCGGTGTTCGCTCTGCGTCAAATCAACCTTTCAAAGATTGAAAGCCGTCCTTTGCGGAACATGCCGCTGCGAATGGCTGATGATAATAGCAATGGGTCACCCAAGTATTTTGATTATCTTTTTTATGTTGATTTTGAAGCGTCAATGGCTGATCCGAGGGCACAAAATGCTCTGAGGCATCTGAATGAGTTTGCTACGTTCTTGCGAGTTCTAGGGAGTTATCCGATGGATACTGGCACAGTGTAA | 1110 | 0.4685 | MAASRIISHPHRPFSPPPSQPHAHSSITLNFTLHPPKRCRLACVLRASLKENDLNDKADLFALPRPLTSTQLSDSVSDGPRLQVAYQGVPGAYSESAAQKAYPNCEAVPCPQFENAFQKVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVHHCLMANHGVKLEDLKRVLSHPQALAQCEHTLTKWGLVREAVDDTAGAAQYIAMHGVKDAGAVASSAAAKIYGLNILAQDIQDDCDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEEGPGILFKALAVFALRQINLSKIESRPLRNMPLRMADDNSNGSPKYFDYLFYVDFEASMADPRAQNALRHLNEFATFLRVLGSYPMDTGTV | 369 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu03g00195 | 369 | ProSitePatterns | Prephenate dehydratase signature 1. | 234 | 256 | IPR018528 | GO:0004664|GO:0009094 | |
| Adu03g00195 | 369 | ProSitePatterns | Prephenate dehydratase signature 2. | 298 | 305 | IPR018528 | GO:0004664|GO:0009094 | |
| Adu03g00195 | 369 | CDD | PBP2_Ct-PDT_like | 84 | 260 | - | - | |
| Adu03g00195 | 369 | Pfam | Prephenate dehydratase | 84 | 260 | IPR001086 | GO:0004664|GO:0009094 | |
| Adu03g00195 | 369 | Gene3D | - | 265 | 366 | - | - | |
| Adu03g00195 | 369 | Gene3D | - | 79 | 166 | - | - | |
| Adu03g00195 | 369 | PANTHER | AROGENATE DEHYDRATASE | 62 | 367 | - | - | |
| Adu03g00195 | 369 | SUPERFAMILY | Periplasmic binding protein-like II | 83 | 264 | - | - | |
| Adu03g00195 | 369 | SUPERFAMILY | ACT-like | 253 | 364 | IPR045865 | - | |
| Adu03g00195 | 369 | ProSiteProfiles | Prephenate dehydratase domain profile. | 83 | 258 | IPR001086 | GO:0004664|GO:0009094 | |
| Adu03g00195 | 369 | PANTHER | PREPHENATE DEHYDRATASE P PROTEIN | 62 | 367 | - | - | |
| Adu03g00195 | 369 | ProSiteProfiles | ACT domain profile. | 272 | 363 | IPR002912 | - | |
| Adu03g00195 | 369 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Adu03g00195 | 369 | CDD | ACT_CM-PDT | 270 | 363 | - | - | |
| Adu03g00195 | 369 | Gene3D | - | 167 | 246 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu03g00195 | Adu-Chr3 | 1842370 | 1845515 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu03g00195 | K05359 | - | pvy:116139197 | 532.717 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Adu03g00195 | 03 | 1842370 | 1845515 | Adu03g00195 | 03 | 1842370 | 1845515 | ECH |