Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00183 ATGGATTTGGCATCCAGTTGCAAGGAAAAATTGGCATATTTTCGAATAAAAGAGCTCAAAGATGTCCTCACGCAGTTGGGCCTTTCAAAGCAGGGAAAAAAGCAGGATCTTGTTGATCGGATACTATCTATGCTCTCAGATGATCAAGTATCCAAAATGTTTGCCAAGAAGAATGCTATTGGAAAAGAACAGGTGGCAAAATTAGTGGACGACACGTATAGAAAAATGCAGATATCTGGTGCCACTGACCTTGCATCAAAGGGACAGGGAGCCTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAAAAGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTATCTGCGGAAGTACATTGGATACAGATCCATTGGTCAAGTGTGACGATCCACGATGCCATGTGTGGCAGCACATAAATTGTGTTATTGTTCCAGAAAAACCTATGGAAGGTGTCCTGCCAGTACCTGATAAATTTTATTGTGAACTCTGCAGACTCAGCCGTGCAGACCCGTTTTGGGTTTCAATGGGACACCCCTTGTTTCCTGTGAAGTTGAGCATAACAAGTAATCCAACTGATGGATCCAACCCAATGCAGAGTGTGGATAGAACATTTCAATTGACAAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGATATTCAGGCTTGGTGTATGCTTCTGAACGACAAGGTTTCATTCAGGATGCAGTGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTACTTGGGGCTAATGGGCGTGATGATGGTCCAATTATCACGCCATATACAAAAGACGGAATTAATAAGATTACCTTAACAGGATGTGATGCTCGCATTTTTTGTGTGGGGGTTCGTATTGTTAAAAGGCGCAGCATGCAACAGATCCTAAACATAATTCCAAAGGAACCTGAAGGTGAACAATTTGATGATGCTCTTGCACGAGTTCGTCGTTGTGTTGGAGGTGGAAATGAAGATGATAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGACACTTTTAGCATCAGCCTTCGTTGTCCGATGAGTGGTTCAAGGATGAAGATTGCAGGTAGATTCAAGCCTTGTATTCACATGGGATGTTTTGATCTTGAAGTTTTTGTGGAAATGAACCAAAGGTCAAGGAAGTGGCAGTGCCCAATATGTCTCAAAAACTATGCGTTGGAGAATATCATTATTGATCCCTATTTCAATCGCATCACTTCTCGGATGACAAACTGTGGTGAGGAGGTTACAGATATTGAGGTGAAGCCCGATGGTTCTTGGCGTGTTAAGACCAAGAGTGAAAGTGAGCGCCTGGAGTTGGGGAATCTTGCACAATGGCACTTCCCTGACGGGTCCCTCTGTGTTTCGGCTGATGGAGAAGGCAGAAGAGTGGAAGCTTTGAAGCTGGTCAAACAGGAGGGTGTTTCAGACAGTCCTACTGGCTTAAAGCTTGGCATTAGGAAGAATCGCGATGGACTTTGGGAAGTCAGCAAACCTGAGGACACAAACACCTCTTCTGGTAATAGATTGAAAGAGGTATTTGGAAATCATGAAGTGGTTATTCCAATGAGCAGTAGTACCACCAACGGAATTGAGATGGATTCTCCATATCTCAATAATGTTAATTTATCATATGATTATACTGCAAATAACACTTCTGCTCAGGTAGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGATAATGATTTATTGGTATCTCCTGCAATTACCTATAAGAACAACGAAACTGAAGATGGTTACTCGGTGCCACCGCCTGGAATTGTTGATTCGTATAATGAAGAGCACACTAATCTTGGTGGTAATTCATGCTTAGGACTTTTCCCTAATGATGATGATTTTGGTTTGTGGTCCTTACCACCTGGAACTCAGGCTGGCCCAGGATTCCAATTATTTAGTCCTGATGCAGATGTGTCAGATGCATTGGTGCATTTGCAGCATGGTCCTATGAATTGCTCATCTTCATTGAATGGTTATGCATTGGCTCCGGATGCTGGTTTGGGGTCTGGTAGTCTTATACCAGATTCCTCTGCTGGTCGATCGGATGCTGATTTAAATGTTGGATTGGTTGACAATCCATTGGCATTTGGGGGAGATGACCCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGATCAGGCAAATATATCTAATGGTGTCCTAAATGAGGATTGGATATCTCTTAGTCTTGGTGGTGGTGCTGCTGGTACAAATGGTGATGCTTCCACTCAAAATGGGTTGAATTCTGGACTTCAAATCGCACCCAGAGATCTAGCTAGAGAAGGTGCCGCAAATACCAATATGGATGATGCTGCATCTTTGCTTCTTGGTATGAATGATGCTAGATCCGACAAGTCAAGTAGACAAAGATCAGATAGCCCATTTTCATTTCCTCGCCAAAAGCGTTCTGTAAGGCCACGCTTGTATCTTTCTATCGACTCAGATTCTGAATAA 2556 0.4198 MDLASSCKEKLAYFRIKELKDVLTQLGLSKQGKKQDLVDRILSMLSDDQVSKMFAKKNAIGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSNVKIKGEKDDSFQSDTKIRCICGSTLDTDPLVKCDDPRCHVWQHINCVIVPEKPMEGVLPVPDKFYCELCRLSRADPFWVSMGHPLFPVKLSITSNPTDGSNPMQSVDRTFQLTRADKDLVSKPEFDIQAWCMLLNDKVSFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKITLTGCDARIFCVGVRIVKRRSMQQILNIIPKEPEGEQFDDALARVRRCVGGGNEDDNADSDSDLEVVSDTFSISLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSRMTNCGEEVTDIEVKPDGSWRVKTKSESERLELGNLAQWHFPDGSLCVSADGEGRRVEALKLVKQEGVSDSPTGLKLGIRKNRDGLWEVSKPEDTNTSSGNRLKEVFGNHEVVIPMSSSTTNGIEMDSPYLNNVNLSYDYTANNTSAQVGGAEVIVLSDSEEDNDLLVSPAITYKNNETEDGYSVPPPGIVDSYNEEHTNLGGNSCLGLFPNDDDFGLWSLPPGTQAGPGFQLFSPDADVSDALVHLQHGPMNCSSSLNGYALAPDAGLGSGSLIPDSSAGRSDADLNVGLVDNPLAFGGDDPXXXXXXXXXXXXXXXXRDQANISNGVLNEDWISLSLGGGAAGTNGDASTQNGLNSGLQIAPRDLAREGAANTNMDDAASLLLGMNDARSDKSSRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00183 851 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Adu03g00183 851 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Adu03g00183 851 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 798 - -
Adu03g00183 851 Pfam SAP domain 14 42 IPR003034 -
Adu03g00183 851 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Adu03g00183 851 SUPERFAMILY FYVE/PHD zinc finger 105 169 IPR011011 -
Adu03g00183 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 336 447 IPR013083 -
Adu03g00183 851 MobiDBLite consensus disorder prediction 809 851 - -
Adu03g00183 851 Gene3D SAP domain 1 64 IPR036361 -
Adu03g00183 851 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Adu03g00183 851 SUPERFAMILY SAP domain 1 64 IPR036361 -
Adu03g00183 851 MobiDBLite consensus disorder prediction 84 103 - -
Adu03g00183 851 SMART PHD_3 114 166 IPR001965 -
Adu03g00183 851 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Adu03g00183 851 SMART sap_9 11 45 IPR003034 -
Adu03g00183 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Adu03g00183 851 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00183 Adu-Chr3 1650236 1659940 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00183 - - aprc:113857557 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01321 08 22437029 22445312 Adu03g00183 03 1650236 1659940 PCT