Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00135 ATGGCTTATTCCAACAAAATATTATTCCAATGCATTTCATTGGCTTTGGTTGTTCTTTTTGGAATCTTGTCTTTAGAGGCCAATGGTAGGATTCTTGAAGATTCCATAATGCATGAGAGACATGAAAAATGGATGGTTCAACATGGTAAATACTATAAAGACTCTAATGAAAAGGAATTAAGGTTCAAAATTTTCAAAGAAAATGTTGAACGCATTGAGGCCTTTAATAGTGATGGAAACAAGTCTTACAAGCTTGGCATTAATCAATTTGCTGATCTAACAAATGATGAGTTTAAGGGTAGGAATAAGTTCAAGGGTCACATGTGTTCCACAATCACAAAGACACCAACATTTAGGTATGAAAATGTGAGTGCTGTTCCACCTTCAATTGATTGGAGACAGAAAGGTGCTGTCACACCTATTAAGGACCAAGGCCAATGTGGATGTTGTTGGGCATTTTCTGCTGTGGCAGCAACAGAAGGAATCACAAAACTAACAACAGGGAAATTAATCTCCTTATCAGAACAAGAGCTTGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTGAAGGTGGTCTAATGGACAATGCATTCAAATTCATAATCCAAAACAAAGGCCTCACAACAGAATCCAATTATCCATACACAGCATCTGATGGAACATGCAACACAAAAGCAGAATCAAACCATGCAGCCAGCATTAAAGGGTTTGAAGATGTACCTGCCAACAGTGAAAGTGCACTTCTAAAAAGTGTTGCCAATCAACCAGTTTCCGTTGCCATTGATGCTAGTGACTTTGGTTTCCAGTTTTACTCAGGTGGTGTTTTCACTGGATCTTGTGGTACTAGTTTGGATCATGGTGTCACTGCAGTTGGTTATGGAGTTAGTGATGATGGAACTAAGTATTGGTTGGTTAAGAATTCATGGGGTGAAACATGGGGTGAACAAGGTTACATTAGAATGCAGAGAGACATTGATGCTAAACAAGCGTTTCAGAAGGCAGATATAAGGGAGGTGGAAGTGAGAGAAACCTTGACAAGTGTGAGTGAGAGAAGAAAAGTTAACATCAAAGAAACAAAACAACAAACAGTTTGTGTGCGTGTTCGTGTTTTTGTGTTCTCGCTTTTCACTGCACTGGTCACCGCCGTTCGGCGGAAACGGACAATGGCCGGCAAAGGCGGAAGCGCTCCGGCGACGTACTCGCCGTCTCCGACCGTTCAGAAAAAGAAAACTTCCATTTTCCAAGAAGACTGGGTCCGACCTGATGGCCGTGGCTTCCACCAGTGCAGGCCTGCTTTTTTCAGGACTGGTGCTGTGAATGCTGCATCAGGATCAGCCTATGCGGAGTTTGGAAACACCAAGATCATTGTATCTGTATTCGGGCCTAGGGAGAGCAAGAAGGCAATGATGTACAGTGATATAGGGCGTTTAAATTGCAATGTTAGCTATACAACATTTGCAAGTCCAGTTCGTGGACAGGGTTCAGACCACAAAGAATACACTGCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAATCTTTCCCCAAGACAACTGTGGATGTTTTTGCATTGGTGCTGGAATCTGGCGGCAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCCTGGCTGATGCTGGAATAATGATGTATGACCTTGTTGCATCAATTTCTGTGTCCTGTCTCAGTAAGAATCTTGTCATTGATCCTATTTTTGAGGAGGAAAACTCCCAAGATGGAAGCTTGATGATTACGTGCATGCCTTCTCGCTATGAAATTACTCAACTTACATTTACTGGGGAATGGTCCACCCCAAAGATTGACGAGGGAATGCAGCTTTGCCTTGACGCTTGTGCAAAGCTTGCAAAGATTATGAGGTCATGTTTGAAAGAAGCTGCTTCTGATTCTCAGGAATAG 1932 0.4229 MAYSNKILFQCISLALVVLFGILSLEANGRILEDSIMHERHEKWMVQHGKYYKDSNEKELRFKIFKENVERIEAFNSDGNKSYKLGINQFADLTNDEFKGRNKFKGHMCSTITKTPTFRYENVSAVPPSIDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGITKLTTGKLISLSEQELVDCDTKGVDQGCEGGLMDNAFKFIIQNKGLTTESNYPYTASDGTCNTKAESNHAASIKGFEDVPANSESALLKSVANQPVSVAIDASDFGFQFYSGGVFTGSCGTSLDHGVTAVGYGVSDDGTKYWLVKNSWGETWGEQGYIRMQRDIDAKQAFQKADIREVEVRETLTSVSERRKVNIKETKQQTVCVRVRVFVFSLFTALVTAVRRKRTMAGKGGSAPATYSPSPTVQKKKTSIFQEDWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKIIVSVFGPRESKKAMMYSDIGRLNCNVSYTTFASPVRGQGSDHKEYTAMLHKALEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASISVSCLSKNLVIDPIFEEENSQDGSLMITCMPSRYEITQLTFTGEWSTPKIDEGMQLCLDACAKLAKIMRSCLKEAASDSQE 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00135 643 Pfam 3' exoribonuclease family, domain 1 429 553 IPR001247 -
Adu03g00135 643 PANTHER - 25 329 - -
Adu03g00135 643 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Adu03g00135 643 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Adu03g00135 643 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Adu03g00135 643 SUPERFAMILY Ribosomal protein S5 domain 2-like 415 584 IPR020568 -
Adu03g00135 643 SUPERFAMILY Ribonuclease PH domain 2-like 555 640 IPR036345 -
Adu03g00135 643 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 329 - -
Adu03g00135 643 SMART pept_c1 126 335 IPR000668 GO:0006508|GO:0008234
Adu03g00135 643 CDD RNase_PH_MTR3 430 636 - -
Adu03g00135 643 SMART Inhibitor_I29_2 41 98 IPR013201 -
Adu03g00135 643 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Adu03g00135 643 Pfam Papain family cysteine protease 126 328 IPR000668 GO:0006508|GO:0008234
Adu03g00135 643 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Adu03g00135 643 Gene3D - 407 642 IPR027408 -
Adu03g00135 643 SUPERFAMILY Cysteine proteinases 37 328 IPR038765 -
Adu03g00135 643 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Adu03g00135 643 Pfam Cathepsin propeptide inhibitor domain (I29) 41 98 IPR013201 -
Adu03g00135 643 CDD Peptidase_C1A 127 325 IPR039417 -
Adu03g00135 643 Gene3D Cysteine proteinases 24 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00135 Adu-Chr3 1287516 1294108 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g00135 - - gmx:100778111 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00135 03 1287516 1294108 Adu03g00135 03 1287516 1294108 ECH