Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02287 ATGCTTACCCTTTTGCACAACAACCTTCCCTTTCATGCCCTATTTGTATTCAAGACCCAGTTCCAGCTGTGTTCGCTCGACTGTGTTGATGAGGTCGGTGTTGCCTTGGCTCTCAAGGCTTGTCAAGGAGAGCTGAAACTTGGGTGCCAACTCCATGGTTTTGCAGTGTCCAGCGGGTTCATTTCGTTGGTCACCGTGTCAAATTCGCTGATGAAGATGTACTGCAAGTCAGGGAATTTTCGGAAGGCCTTGCGTGTGTTTGAGAATTTGAGTTGCCCTGACATTGTTTCTTGGAACACTGTGCTTTCAGGGTTCGAGGAAAACATGGATGCTTTGAGTTTTGCTTGTTCTATGCATTCAAATGGGATCGTGTTTGATCCTGTGACATACACCACTGCTCTTGCCTTTTGTTGGGGTGATCATGGGTTTTGTTTTGGGAGCCAATTGCATTCTCTTGTTGCAAAATTTGGATTCAATTGTGAAGTTTTCGTAGGGAATGCTCTGATAACCATGTATTCAAGGTCAGGGAGTTTAGCTGAGGCTAGGAGGGTGTTTGATGAGATGCCCCGGAAGGATTTGGTTTCATGGAGTGCAATGCTTTCGGGTTATGCTCAAGAGGGGGAATGTTATGGGCTGGAAGCAGTTTCACTGTTTGTTAGCATGGTTAGGCAAGGGATGTCCCTTGACCATGTCTCGTTTACAGGTGCAGTTTCAGCTTGTGGTTATATGAAAAACTTAGAGCTAGGGAGGCAGATACATGGTTTGACACTTAAAGTGGGGTATGGAACACATGTTTCGGTTTGCAATGTGTTGATCTCGACTTATTTGAAGTGTGAGGTCGGCAGAGATGCAAAACTGGTTTTTCAGCTGATGAATAATCGGAATGTAGTCTCTTGGACGACAATGATTTCAATTGAAGAAGAAGATGCAGTGTCTCTTTTCAATGAGATGAGAAAAGACGGTGTATATCCAAATGATATTACATTTATAGGACTATTACATTCTATTACACTCAATAATCTGGTGGTGGAAGGTGAAATGATTCATGGATTATGCATCAAAAGCAGCTTCTTGTCGGAACCAAATGTCTCCAATAGCCTTATTACCATGTATGCCAAGTTTGAATCTGTTCAAGAATCGAAGAAAATTTTTGAGGAGGTTAACCATAGAGAGATAATAGCATGGAATTCATTAATTTCAGGGTATGCTCAGAATAGCTTATTCAAAGATGCTTTCCTTACATTTTTGGCTGCAGTGAATGAGGTAAAACCAAACCAATACACTTTTGGCAGTGTCTTAAATGCTATTGCTGCTGCTGAGGATATATCTTTGAAACATGGGCAACGATGCCATTCGGAATTGATCAAACGTGGGTTAGACACTGATCCGATTGTTTCAGGTTCTCTGCTTGACATGTATGGCAAGCGTGGGAGCATAGCCGAGTCTCAAAGAGTATTTGACGAGACACCTAGAAAAAGTGAGTTTGCTTGGACTGCAATAGTATCAGCCTATGCTCGACATGGGGACTATGAGTCAGTGATGAGTTTGTTTAAGGAGATGGAGAGTGAAGGAACCACTCCTGACTCCATCACTTTCCTTTCCGTTTTAGCTGCATGTTGTAGAAAAGGCATGGTTGATGTAGGCCATAGAGTCTTTGACTCCATGGTGAAAGAACATTCAATTGAACCAACTCCAGAACATTATTCTATCATGGTGGACATGTTAGGTCGCGCAGGACTGCTAAATGAGGCAGCAGAGTTGATGCACCAGATTCCAGGAGGACCTAGATTGTCAGTGTTGCAAAGCTTGCTTGGTTCTTGTAGAATACATGGGAATATAGAGATGGCTGAGAGGGTTATTGATAGGTTGGTTGAAATGGATCCTGCGAGTTCAGGTTCATATGTATTAATGGCGAACTTATACGCTGAGAAAGGGAAATGGGAGAAAGTAGCTGAAGTGAGGAAACTTATGAGACAGAGGGGAGTGAAGAAGGAAGTTGGGTTTAGTTGGGTGGACGTTGGTGGTATTAATTCCTTGTATTTGCATGGTTTCTCTTCCGGGGATAAGTCGCACCCGGAATCTGAGGATATTTGTAACATGGCAGAGTTTATTGGATTGCAAATGAAAGTTTTGAAAGGGAGCAAAGCAAGGGAAGGAGACTGGCATCAGGAATAG 2175 0.429 MLTLLHNNLPFHALFVFKTQFQLCSLDCVDEVGVALALKACQGELKLGCQLHGFAVSSGFISLVTVSNSLMKMYCKSGNFRKALRVFENLSCPDIVSWNTVLSGFEENMDALSFACSMHSNGIVFDPVTYTTALAFCWGDHGFCFGSQLHSLVAKFGFNCEVFVGNALITMYSRSGSLAEARRVFDEMPRKDLVSWSAMLSGYAQEGECYGLEAVSLFVSMVRQGMSLDHVSFTGAVSACGYMKNLELGRQIHGLTLKVGYGTHVSVCNVLISTYLKCEVGRDAKLVFQLMNNRNVVSWTTMISIEEEDAVSLFNEMRKDGVYPNDITFIGLLHSITLNNLVVEGEMIHGLCIKSSFLSEPNVSNSLITMYAKFESVQESKKIFEEVNHREIIAWNSLISGYAQNSLFKDAFLTFLAAVNEVKPNQYTFGSVLNAIAAAEDISLKHGQRCHSELIKRGLDTDPIVSGSLLDMYGKRGSIAESQRVFDETPRKSEFAWTAIVSAYARHGDYESVMSLFKEMESEGTTPDSITFLSVLAACCRKGMVDVGHRVFDSMVKEHSIEPTPEHYSIMVDMLGRAGLLNEAAELMHQIPGGPRLSVLQSLLGSCRIHGNIEMAERVIDRLVEMDPASSGSYVLMANLYAEKGKWEKVAEVRKLMRQRGVKKEVGFSWVDVGGINSLYLHGFSSGDKSHPESEDICNMAEFIGLQMKVLKGSKAREGDWHQE 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02287 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Adu02g02287 724 PANTHER OS07G0578800 PROTEIN-RELATED 506 715 IPR045215 GO:0003723|GO:0009451
Adu02g02287 724 SUPERFAMILY TPR-like 454 629 IPR011990 GO:0005515
Adu02g02287 724 TIGRFAM PPR: pentatricopeptide repeat domain 530 564 IPR002885 -
Adu02g02287 724 TIGRFAM PPR: pentatricopeptide repeat domain 496 528 IPR002885 -
Adu02g02287 724 TIGRFAM PPR: pentatricopeptide repeat domain 68 89 IPR002885 -
Adu02g02287 724 TIGRFAM PPR: pentatricopeptide repeat domain 166 193 IPR002885 -
Adu02g02287 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 228 IPR002885 -
Adu02g02287 724 Gene3D Tetratricopeptide repeat domain 246 344 IPR011990 GO:0005515
Adu02g02287 724 Gene3D Tetratricopeptide repeat domain 346 452 IPR011990 GO:0005515
Adu02g02287 724 Gene3D Tetratricopeptide repeat domain 147 245 IPR011990 GO:0005515
Adu02g02287 724 PANTHER OS07G0670000 PROTEIN 1 419 - -
Adu02g02287 724 PANTHER OS07G0670000 PROTEIN 506 715 - -
Adu02g02287 724 PANTHER OS07G0670000 PROTEIN 421 517 - -
Adu02g02287 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 563 IPR002885 -
Adu02g02287 724 PANTHER OS07G0578800 PROTEIN-RELATED 1 419 IPR045215 GO:0003723|GO:0009451
Adu02g02287 724 PANTHER OS07G0578800 PROTEIN-RELATED 421 517 IPR045215 GO:0003723|GO:0009451
Adu02g02287 724 Pfam PPR repeat 166 192 IPR002885 -
Adu02g02287 724 Pfam PPR repeat 365 387 IPR002885 -
Adu02g02287 724 Pfam PPR repeat 68 88 IPR002885 -
Adu02g02287 724 Pfam PPR repeat 194 225 IPR002885 -
Adu02g02287 724 Pfam PPR repeat 298 322 IPR002885 -
Adu02g02287 724 Pfam PPR repeat 567 590 IPR002885 -
Adu02g02287 724 Pfam PPR repeat 394 415 IPR002885 -
Adu02g02287 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Adu02g02287 724 Gene3D Tetratricopeptide repeat domain 28 141 IPR011990 GO:0005515
Adu02g02287 724 Gene3D Tetratricopeptide repeat domain 467 679 IPR011990 GO:0005515
Adu02g02287 724 Pfam PPR repeat family 493 541 IPR002885 -
Adu02g02287 724 Pfam E motif 610 672 IPR046848 -
Adu02g02287 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 191 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02287 Adu-Chr2 87796101 87798390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02287 29 697 Glycoside Hydrolase AT3G49170 31.503 1.06e-113 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02287 - - cam:101513383 1135.17