Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g01943 ATGGCGGTGGTTGGTGTTCTTGCGCTACAGGGATCCTTCAATGAACACATTGCTGCTCTTAGGAGGTTAGGTGTGAAAGGTGTTGAGATTCGGAAGCCAGAGCAGCTTCAAAGTGTGTCTTCACTTATCATCCCTGGCGGAGAGAGCACCACCATGGCCAAGCTCGCTGAGTATCACAACCTGTTTCCTGCATTGAGGGAGTTTGTCGAAATGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTGATATTCTTGGCAAATAAAGCAACAGGTAGACAGAAGACTGGTGGACAAAAACTGGTTGGTGGACTTGATTGTACTGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAAGCTGACCTTCCGGTGCCAGAGCTTGCATCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAATTTTTATCCGTGCTCCGGCAATTCTTGAAGCAGGGCCAGAAGTTCAAGTTCTGGCTGACTATCCTGTCCCTTCTAACAAATTCTTGGATTCTGATTCCTTCATTGAAGACAAAAAGGTTTGCGGCAAAGTCATAGTTGCAGTCAGACAAGGAAACATTCTAGGGACTGCTTTCCATCCGGAATTGACAGCCGATACTCGATGGCATAGTTATTTCATAAAAATGTCAAATGCAAATGTTGGGGAAGAAGCCTCAAGTAGTAGCCTTGTTCCAGCAGAGGTCGACATAACTTCTAACCAACAACCGTGCAGTGACCTTCCTATCTTTCAATAG 756 0.463 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLQSVSSLIIPGGESTTMAKLAEYHNLFPALREFVEMGKPVWGTCAGLIFLANKATGRQKTGGQKLVGGLDCTVHRNFFGSQIQSFEADLPVPELASKEGGPETFRGIFIRAPAILEAGPEVQVLADYPVPSNKFLDSDSFIEDKKVCGKVIVAVRQGNILGTAFHPELTADTRWHSYFIKMSNANVGEEASSSSLVPAEVDITSNQQPCSDLPIFQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g01943 251 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Adu02g01943 251 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 162 IPR002161 GO:0004359|GO:0042819|GO:0042823
Adu02g01943 251 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 250 IPR002161 GO:0004359|GO:0042819|GO:0042823
Adu02g01943 251 PANTHER - 2 250 - -
Adu02g01943 251 Gene3D - 1 227 IPR029062 -
Adu02g01943 251 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 223 - -
Adu02g01943 251 SUPERFAMILY Class I glutamine amidotransferase-like 3 216 IPR029062 -
Adu02g01943 251 CDD GATase1_PB 4 214 IPR002161 GO:0004359|GO:0042819|GO:0042823
Adu02g01943 251 Pfam SNO glutamine amidotransferase family 6 216 IPR002161 GO:0004359|GO:0042819|GO:0042823
Adu02g01943 251 ProSiteProfiles PdxT/SNO family profile. 3 218 IPR002161 GO:0004359|GO:0042819|GO:0042823
Adu02g01943 251 PIRSF Glut_amidoT_SNO 1 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Adu02g01943 251 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 216 IPR002161 GO:0004359|GO:0042819|GO:0042823
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g01943 Adu-Chr2 81278310 81281993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g01943 K08681 - gmx:100786227 417.157