Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00551 ATGACATTCACATCATCACATTCACTTGCGCATTCTATTGCCATCTCTTCAAGATCAATGGCAGACATGGAAAGGTTCAGCAATGCTGGGAGAGGCAGCAACATCACCGGAATATCAGAGTTCAAGAGATATCTATGGCGTTTCGGGTACCTCGACCATAATGTTAATACCACATGTAATTGTTTCAGCGACGAGTTTGACGCCATGTTAGAATCTGCTCTCGTTAGATACCAACGCAAGCTTGGACTCCAAGTCACTGGCAAGCTCGATTCCATCACCATTTCTGAGATGATCACACCGAGATGCGGAGTTCCAGACAGTAATGATCACACTCACACACACACACACATGCACTCCGCAAAGAACTTCGTGTATTTTCCGGGGAAGCCACGGTGGTCGGGTCCAATGCCGACGACACTCACCTACGCTTTCTCCCCTGAATACACCATCCACACCTTGACCCTTCGCCAGATCCGGAGAGCGTTCCGACGCGCCTTCACGCGCTGGTCTAACGTCATTCCTCTCACATTTGTGGAATCAGACGACTACGGTTTTGCTGAGATCAAGATAGGGTTTTACAGCGGCGACCACGGCGATGGCGAGGCTTTCGACGGGGTTCTTGGAGTGCTGGCGCATTCATTCTCGCCGGAGAGCGGGCGGCTACACCTGGATGCGGCGGAGACGTGGGCAGTGGACTTCGGGGAGAGTTGGTCGGAGGTAGCGGTGGATTTGGAGTCCGTGGCAACGCACGAGATTGGACACGTGCTTGGTCTGTCTCACAGTTCGGTTAGAGAGGCAGTTATGTATCCCAGCTTGAGGCCGAGAGAGAAGAGATATCGTCTCCATATTGATGACGTCATGGGAGTCCAATCTCTTTATGGCTCCAACCCTCATTTCAGATCTTCTGATATCTCGTCGCTTCAATCTGCTATCTCCGCAAATCATGCTCCTCCTCGCTTTCCACCATTCAGTATTCTTCTCTCTTGTGCATACCTTTTGTCTTTCTTTATAATTTTTTCCAGAAGATGA 1029 0.5024 MTFTSSHSLAHSIAISSRSMADMERFSNAGRGSNITGISEFKRYLWRFGYLDHNVNTTCNCFSDEFDAMLESALVRYQRKLGLQVTGKLDSITISEMITPRCGVPDSNDHTHTHTHMHSAKNFVYFPGKPRWSGPMPTTLTYAFSPEYTIHTLTLRQIRRAFRRAFTRWSNVIPLTFVESDDYGFAEIKIGFYSGDHGDGEAFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGESWSEVAVDLESVATHEIGHVLGLSHSSVREAVMYPSLRPREKRYRLHIDDVMGVQSLYGSNPHFRSSDISSLQSAISANHAPPRFPPFSILLSCAYLLSFFIIFSRR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00551 342 PRINTS Matrixin signature 186 214 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu02g00551 342 PRINTS Matrixin signature 247 272 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu02g00551 342 PRINTS Matrixin signature 281 294 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu02g00551 342 PRINTS Matrixin signature 162 177 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu02g00551 342 PRINTS Matrixin signature 97 110 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu02g00551 342 CDD ZnMc_MMP 131 294 IPR033739 GO:0008237|GO:0008270
Adu02g00551 342 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 124 296 - -
Adu02g00551 342 SMART col_5 128 295 IPR006026 GO:0006508|GO:0008237|GO:0008270
Adu02g00551 342 Pfam Matrixin 137 294 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Adu02g00551 342 ProSitePatterns Matrixins cysteine switch. 100 107 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Adu02g00551 342 PANTHER MATRIX METALLOPROTEINASE 12 319 - -
Adu02g00551 342 PANTHER METALLOENDOPROTEINASE 4-MMP 12 319 - -
Adu02g00551 342 Pfam Putative peptidoglycan binding domain 38 95 IPR002477 -
Adu02g00551 342 Gene3D Collagenase (Catalytic Domain) 30 299 IPR024079 GO:0008237
Adu02g00551 342 SUPERFAMILY PGBD-like 30 106 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00551 Adu-Chr2 7245415 7246922 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00551 - K07999 gmx:100781237 420.624