Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g00060 ATGTTCTTCAAATCCCATTTCAAAAAACAGTTCCGTTTCCCTCCAACACTTTTCTCATTTGTAACTCAATGCTTCAGTAACTACTCTCATGAACCACATCCATGTAATCATTCCCTTAGCAGACTCAAAGCTTTTGTTCCAATCCCTAATGAACCCAACTTTAGGGAGCCTGAAATTGTTCATTTGTTTTGTGCTAAAGCCCTCAAAGTTGCTGCTATAAGGGCTTTTCTCCCTGAAGGGAAACAGTTGCATGCCCATTTGATAAAGTTTGGTTTTTGTCATGTTCTGTCATTGCAAAATCAGTTCTTGAGTATTTACCTTAAATGCAAGGAAACCAAAGATGCACTTAAACTGTTTGATGAATTGCCTGGGAGAAATGTGGTCTCGTGGAATATCCTGATCCGTGGCTTTGTTGGATGTGGAAATGAAAATGACTTATTTCCTCATCTGGGGTTTTCTTATTTCAAGCGGATGTTGTTCGAAAAGGTGGCTCCGGATGATATAACATTGAATGCTTTGATTGGTGTATGTGCAAAGCTTCATGATATCAAAATTGGAGTACAACTGCACTGTTTTGCAATGAAAAGAGGACTTGATTTGGATTGTTTTGTAGGTAGTGCTTTGGTTGATTTTTATGCAAAATTTGGTTTGGTTGAGAATTCAAGGAAGGTTTTTTGTGCTGTTACACATAGAGATTTGGTTATGTTGAATGTCATGATTTCTTGTTATGCCCTGAATTGTTTACCAGAAGAGGCCTTCAGGATTTTCAACTCAATGAGATCGGATGGTGCTAATGGCGACGAATTCACTTTTAGCAGCCTGCTAAGTATATGTGATATTTTAGAATATTATGATTTTGGAAAGCAAGCTCATAGTCTTATTCTGAAACTGTCATTTGAATCCGATATTCTAGTGGCGAGTGCATTAATCAATATGTACGCAAAAAATGAAGATGTCATTGATGCAAAGAGAGTATTTGACAAGATGGCGATTCGAAATGTTGTGGCATCGAATACCATGATTGTTGGGTGTGGAAATAATGGCAAAGTGATTGATGTTATGAAGATTCTCAGAGATATGTTACTCGAAGGAATTTTCCCCGATGAACTCACTATTTCCAGCGTTCTTAGCTCGTGTGGCTATGCTTCTGCCATAACTGAAACTCAGCAAGCTCATGCCTTAGCAGTTAAGCTGTCATTTCAAGAATTTGTATCTGTTTCCAATTCTTTGATTACTGCATACTCCAAGTGTGGTAACATAACTAATGCATTCAAATGCTTCAGATTGATGTTAGAACCTGATCTTGTTACATATACTTCACTGATAAATGCATATGCATTCCATGGTCTTGGCAAAGAAGCAACTGGGATGTTTGAGAAGATGCTATCGTGCGGCATAAAACCTGACCGGATTTCTTTTCTTGGCATTCTCTCTGCTTGTGTGCATTGCGGATTGGTGAACGCAGGACTGCACTACTTCAAATTAATGACAGATGTGTATCATATTATTCCTGATTCAGATCACTATACTTGCCTTATTGATCTCCTTGGAAGACATGGTTTCATAAACGAAGCCTTTGAATTCTTGAAATCAATTCCAATTGAAGCTGAATCGAACATGTTAGGAGCATTCATTGGGTCTAGTAAACTGCATGAAAATATAGAACTGGCTATATCGGCAGCAGGAAAGCTTTTTGCCATAGAGCCAGAGAAGATTGTGAACTATGCTGTCATGGCTAACATTTATGCTTCTCATAATCACTGGCTTGATGCTGAAAGAGTTCGAAAAACCATGAGGGACAAGAATGTTGCTAAATTCCCAGGTTGTAGCTGGATACAGGTTGGTAATCAAGTTCATTCATTTGTGTCTAGTGATAAGGCACACCCCAAAGTTTTGCAGATTTATGCTACTGTAAAAATGTTGCTTAGTCCATTGAAAGAAGAAAATGGTTTGAATTTGTAA 1962 0.3807 MFFKSHFKKQFRFPPTLFSFVTQCFSNYSHEPHPCNHSLSRLKAFVPIPNEPNFREPEIVHLFCAKALKVAAIRAFLPEGKQLHAHLIKFGFCHVLSLQNQFLSIYLKCKETKDALKLFDELPGRNVVSWNILIRGFVGCGNENDLFPHLGFSYFKRMLFEKVAPDDITLNALIGVCAKLHDIKIGVQLHCFAMKRGLDLDCFVGSALVDFYAKFGLVENSRKVFCAVTHRDLVMLNVMISCYALNCLPEEAFRIFNSMRSDGANGDEFTFSSLLSICDILEYYDFGKQAHSLILKLSFESDILVASALINMYAKNEDVIDAKRVFDKMAIRNVVASNTMIVGCGNNGKVIDVMKILRDMLLEGIFPDELTISSVLSSCGYASAITETQQAHALAVKLSFQEFVSVSNSLITAYSKCGNITNAFKCFRLMLEPDLVTYTSLINAYAFHGLGKEATGMFEKMLSCGIKPDRISFLGILSACVHCGLVNAGLHYFKLMTDVYHIIPDSDHYTCLIDLLGRHGFINEAFEFLKSIPIEAESNMLGAFIGSSKLHENIELAISAAGKLFAIEPEKIVNYAVMANIYASHNHWLDAERVRKTMRDKNVAKFPGCSWIQVGNQVHSFVSSDKAHPKVLQIYATVKMLLSPLKEENGLNL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g00060 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Adu02g00060 653 Pfam PPR repeat 408 432 IPR002885 -
Adu02g00060 653 Pfam PPR repeat 307 330 IPR002885 -
Adu02g00060 653 Pfam PPR repeat 102 126 IPR002885 -
Adu02g00060 653 Pfam PPR repeat 508 531 IPR002885 -
Adu02g00060 653 Gene3D Tetratricopeptide repeat domain 404 630 IPR011990 GO:0005515
Adu02g00060 653 Gene3D Tetratricopeptide repeat domain 286 397 IPR011990 GO:0005515
Adu02g00060 653 Gene3D Tetratricopeptide repeat domain 186 285 IPR011990 GO:0005515
Adu02g00060 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Adu02g00060 653 Pfam E motif 551 613 IPR046848 -
Adu02g00060 653 Gene3D Tetratricopeptide repeat domain 52 185 IPR011990 GO:0005515
Adu02g00060 653 PANTHER OS07G0578800 PROTEIN-RELATED 52 632 IPR045215 GO:0003723|GO:0009451
Adu02g00060 653 Pfam PPR repeat family 232 276 IPR002885 -
Adu02g00060 653 Pfam PPR repeat family 332 379 IPR002885 -
Adu02g00060 653 Pfam PPR repeat family 433 481 IPR002885 -
Adu02g00060 653 PANTHER OS07G0259400 PROTEIN 52 632 - -
Adu02g00060 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Adu02g00060 653 TIGRFAM PPR: pentatricopeptide repeat domain 235 263 IPR002885 -
Adu02g00060 653 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Adu02g00060 653 TIGRFAM PPR: pentatricopeptide repeat domain 338 369 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g00060 Adu-Chr2 692468 694429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g00060 18 647 Glycoside Hydrolase AT3G49170 30.805 8.90e-105 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g00060 - - gmx:100778378 931.013