Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03278 ATGACTTTGCACGATGGAGGAATGACGCGAGACAAGAGCAAGTGCCAAAGTGAGGAGATGATAGTGGACGAGAATGACGGAGTGACGAGAATAAGTGGAGGCCAAGAATCCGGTATCGTTAAGCACGAAGAAAGAACCATAGGCGGAAATTCCAAACCCCAGCTTACTTTCACCTTCTTCACTCCGATTCCCAGGAAGCTTCAAATGGCGGCGGCGGCTTCAGCAACAGCACCTACCTTCACCGTTGGAACTGCCCATAGAGGAACCTCCCTCCCTCAATCGAAGCCTCTCGGAGGACTTAGGTTTAACTCGCAGAACCCCCTCAAGAACTTCTGCGGCCTCAAGGCTTCATCTTCCGTCACATTGGAGTCCCAGTTATCGTTCTCCGGCAAGGAAACCGTTTTCGCCCTCCGAGCATCTTTTGCATCCAAGGCACAAACTCAAGACAGGACTATCCACTACAATCTTCAGCCTCAGGCATCGTTCAGAGTCGCCGTTCTCGGTGCCGCCGGAGGGATTGGCCAGCCTCTCGCTCTGCTCATCAAGATGTCCCCGCTTGTTTCTGATTTACACCTTTATGATATTGCCAATGTCAAGGGTGTTGCTGCTGACATCAGCCACTGCAACACGCCTTCGCAGGTCAGGGATTTCACCGGAGCTGCTGAGTTGGCTAACTGTTTGAAAGGGGTTGATGTTGTTGTTATCCCCGCTGGAGTTCCAAGGAAGCCAGGGATGACTCGCGACGACCTTTTCAACATCAATGCCGGCATTGTTAGGGACTTGGTTTCGGCTGTGGCCGATAATTGCCCCGGTGCTTTTATTCACATCATCAGTAATCCGGTGAACTCCACGGTGCCTATTGCGGCCGAGGTTCTGAAGCAGAAGGGTGTGTATGATCCTAAGAAGCTCTTTGGTGTTACTACCTTGGATGTTGTCAGGGCGAACACATTTGTTGCTCAAAGGAAGAACCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCTGGGATTACCATACTTCCCCTGCTGTCGAAGACAAAGCCCTCCGCGAGTTTCACTGATGAAGAGATTGAAGAGTTAACTGTTAGGATTCAGAATGCAGGAACAGAAGTTGTTGAAGCAAAGGCTGGTGCCGGATCTGCTACTCTATCTATGGCATATGCGGCTGCTAGATTCGTTGAGTCCTCTCTTCGTGCTCTCGATGGAGACGGGGACGTGTATGAGTGCTCGTTTGTACAATCAGACCTGACTGAGCTTCCATTTTTTGCTTCAAGGGTCAAACTCGGCCGGAAAGGAGTTGAGGCTTTGGTTCCATCTGATCTCCAAGGGTTGACTGAATATGAACAGAAGGCTTTGGAAGCACTTAAGCCGGAACTTAAGGCCAGCATCGAAAAGGGGATTGCTTTTGCTCAGAAGCAAACAGTTGCTGCTTAA 1443 0.5038 MTLHDGGMTRDKSKCQSEEMIVDENDGVTRISGGQESGIVKHEERTIGGNSKPQLTFTFFTPIPRKLQMAAAASATAPTFTVGTAHRGTSLPQSKPLGGLRFNSQNPLKNFCGLKASSSVTLESQLSFSGKETVFALRASFASKAQTQDRTIHYNLQPQASFRVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGAAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTKPSASFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTELPFFASRVKLGRKGVEALVPSDLQGLTEYEQKALEALKPELKASIEKGIAFAQKQTVAA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03278 480 Gene3D - 307 478 IPR015955 GO:0003824|GO:0016616
Adu01g03278 480 Pfam lactate/malate dehydrogenase, NAD binding domain 163 305 IPR001236 GO:0016491
Adu01g03278 480 ProSitePatterns Malate dehydrogenase active site signature. 306 318 IPR001252 GO:0006108|GO:0016615
Adu01g03278 480 Gene3D - 160 306 - -
Adu01g03278 480 PANTHER MALATE AND LACTATE DEHYDROGENASE 92 480 - -
Adu01g03278 480 CDD MDH_glyoxysomal_mitochondrial 162 473 IPR010097 GO:0006099|GO:0030060
Adu01g03278 480 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 92 480 - -
Adu01g03278 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 306 IPR036291 -
Adu01g03278 480 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 307 472 IPR022383 GO:0016616
Adu01g03278 480 SUPERFAMILY LDH C-terminal domain-like 306 473 IPR015955 GO:0003824|GO:0016616
Adu01g03278 480 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 163 474 IPR010097 GO:0006099|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03278 Adu-Chr1 105482495 105485701 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03278 K00026 - gmx:100783173 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03278 01 105482495 105485701 Adu01g03278 01 105482495 105485701 ECH