Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03201 ATGGCAATGCAGGAAGCAAGCCCTGCCACCGCTCCTAGTGCCCAAGTTGTCGGCAATGCATTTGTGGAGCAATACTATCACATTCTACACCAATCCCCAAATTTGGTGCACAGATTTTACCAGGACTCAAGTTTCTTAAGCCGTTCAGACAACGATGGCCAGATGACAACTGTGACTACTATGCAAGCAATCAATGAAAAGATACTTTCCTTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCTGATGCTCAGGAGTCATATGAGAAAGGTGTGATAGTTTTAGTAACTGGATGCTTAACCGGGAAGGATAATGTGAAAAGGAAGTTCTCACAGACATTCTTTCTGGCACCACAAGATAAGGGGTATTATGTCTTAAATGACGTCTTTAGGTATGTTGAGGAGAATGACACACTGCAGTCATCAAATCCCGACTCCACTGTCAATGAAAAAGCTGAGGCAGTGGCCATGCCGGAAGCAGATAATATACATGCTCCAGAACATCTTGTGACCAACCCTGCAATAACAGCAGAGAGTGAAAACCTTAATAATGGAGCTGAAGGTTATAATCCAGAGGACAATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCTCTGCAGATTTAAGTCAGAATGTTGCGATTCATGATTCAACTTCTGCAGTCCAGGATGATGCACCGAAGAAGTCATATTCATATGCATCAATTGTAATGAAAAGTAACACAGCATCTGGTCCTGTATATGTTCCCAGCCGAACTGTAAGAGCAGTACCTGCTAAATCCAGTGAACAATGGCCTACTACTACCAAACCAACTCCAGTACCAGAGGCATTAGCTCCTAGTAATGACAGTGCTCCTGGGAGTAGTGATGTTCATGAGGAAGCTGAAGGTCATTCCATATACATACGGAATTTGCCATTTAATGCAACTGTTGAACAACTTGAGGAGGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAATCCAAGTTAGAAGTAGTAAGCATGGCTTCTGTTTCGGCTTTGTTGAATTTGAGGAAATGACTTCCATGAATAGCGCACTTGAGGCTTCACCTATCACCGTTGGTGATCGACAAGCTGTTATTGAGGAGAAGAGAACTACTACAAGAGTTAGTGGTAGTGGAAGAGGAAGGTTTCCCTCCGGAAGAGGTGGGTTCAGAAGTGACAGTTTCAGGGGGCGTGCAAAATTTGGTGGCGGAAGAGGTTATGGCAGAAATGAGTTCAGAAACCAAGGAGAGTTCACAACGCGACCTAAGGGTCCAGCTGGACAAAAGGGAGATGGTTCTCAACGGCCCAGTCAAAATGGAAGTGGGCGGGGTGGACGGCAAGGTGTTGGCAACCGAAGTACTGCACCATCAACTTGA 1398 0.4413 MAMQEASPATAPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDNDGQMTTVTTMQAINEKILSLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVKRKFSQTFFLAPQDKGYYVLNDVFRYVEENDTLQSSNPDSTVNEKAEAVAMPEADNIHAPEHLVTNPAITAESENLNNGAEGYNPEDNEEEGSVIDEEVAEPSADLSQNVAIHDSTSAVQDDAPKKSYSYASIVMKSNTASGPVYVPSRTVRAVPAKSSEQWPTTTKPTPVPEALAPSNDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEEMTSMNSALEASPITVGDRQAVIEEKRTTTRVSGSGRGRFPSGRGGFRSDSFRGRAKFGGGRGYGRNEFRNQGEFTTRPKGPAGQKGDGSQRPSQNGSGRGGRQGVGNRSTAPST 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03201 465 MobiDBLite consensus disorder prediction 182 201 - -
Adu01g03201 465 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Adu01g03201 465 Gene3D - 294 383 IPR012677 -
Adu01g03201 465 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 457 - -
Adu01g03201 465 CDD RRM_SF 304 361 - -
Adu01g03201 465 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Adu01g03201 465 MobiDBLite consensus disorder prediction 376 465 - -
Adu01g03201 465 SMART rrm1_1 303 374 IPR000504 GO:0003723
Adu01g03201 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Adu01g03201 465 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Adu01g03201 465 MobiDBLite consensus disorder prediction 438 465 - -
Adu01g03201 465 MobiDBLite consensus disorder prediction 262 299 - -
Adu01g03201 465 CDD NTF2 13 135 IPR018222 -
Adu01g03201 465 Gene3D - 7 137 - -
Adu01g03201 465 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 457 IPR039539 -
Adu01g03201 465 MobiDBLite consensus disorder prediction 262 279 - -
Adu01g03201 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 378 IPR000504 GO:0003723
Adu01g03201 465 SUPERFAMILY RNA-binding domain, RBD 298 405 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03201 Adu-Chr1 104114605 104119316 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03201 K24983 - gmx:100801253 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03201 01 104114605 104119316 Adu01g03201 01 104114605 104119316 ECH