Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03135 ATGTCGGAGATTCAAATCCGGCAACTTAATCAGTTGAGGGAGATATTCGCTCGCTTCGACATGGATTCAGACGGAAGTCTGACCATGTTGGAGCTAGCGGCACTCCTAAGGTCACTCGGGATGAAACCCTCGGGTGACCAACTTCAAGCACTGCTTAAAAGGATGGACTCCAATGGCAATGGCTCTGTCGAGTTTGATGAACTGGTCAGAGCCATAATGCCGGACATGGATGCTCAGATTCTGCTTAATCAAGAACAGTTACTTGCCATGTTTAAGTGCTTTGATCGCGACGGCAACGGCTATATCTCGGCTGCCGAGTTGGCCGGTGCAATGGCGAAGATGGGCCAGCCGTTAACGTACCGCGAGCTGACTGAGATGATCAAGGAGGCTGACACGGATGGTGATGGTGTTATCAGCTTCAATGAATTTGCAGCTATCATGTCTCGCTCTGCATCTGATTTCTTAGGACTCAAGAAGAAAACAAGTTCATTGGACTAA 498 0.488 MSEIQIRQLNQLREIFARFDMDSDGSLTMLELAALLRSLGMKPSGDQLQALLKRMDSNGNGSVEFDELVRAIMPDMDAQILLNQEQLLAMFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFNEFAAIMSRSASDFLGLKKKTSSLD 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03135 165 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Adu01g03135 165 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Adu01g03135 165 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Adu01g03135 165 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Adu01g03135 165 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Adu01g03135 165 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Adu01g03135 165 CDD EFh 11 73 IPR002048 GO:0005509
Adu01g03135 165 Gene3D - 104 158 - -
Adu01g03135 165 SUPERFAMILY EF-hand 4 149 IPR011992 -
Adu01g03135 165 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Adu01g03135 165 Gene3D - 1 103 - -
Adu01g03135 165 CDD EFh 86 148 IPR002048 GO:0005509
Adu01g03135 165 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Adu01g03135 165 Pfam EF-hand domain pair 85 148 IPR002048 GO:0005509
Adu01g03135 165 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Adu01g03135 165 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Adu01g03135 165 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Adu01g03135 165 SMART efh_1 47 75 IPR002048 GO:0005509
Adu01g03135 165 SMART efh_1 86 114 IPR002048 GO:0005509
Adu01g03135 165 SMART efh_1 11 39 IPR002048 GO:0005509
Adu01g03135 165 SMART efh_1 122 150 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03135 Adu-Chr1 103047247 103048232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g03135 8 158 EF-hand Containing Proteins AT1G18530 75.497 1.07e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03135 K13448 - gmx:100795885 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03135 01 103047247 103048232 Adu01g03135 01 103047247 103048232 ECH