Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g03111 ATGGTTGAAGCCTTCGACGACAATAGTAATAATAAGCTCCCTGAGCTCAAATTGGACACGAAGCAAGCCCAAGGGTTTCTATCATTTTTCAAAACCCTACCTAATGATTCGAGGGCCATCCGGTTTTTTGATCGCAGGGACTACTATACTGCTCATGGTGAAAATGCAACTTTCATTGCGAAGACCTACTACCACACTACTACTGTCTTGCGGCAACTGGGTAGTGGATCGGATCCTCTTTCAAGTGTAAGTGTCAGTAGGACCATGTTTGAAACAATTGCTCGTGATCTACTTTTGGAGAGAACAGACCATACCCTTGAACTCTATGAGGGTAGTGGTTCTAACTGGAGATTGGTCAAAAGTGGAACGCCTGGCAATATTGGCAGTTTTGAGGATGTTTTGTTTGCTAACAGTGAGATGCAGGATTCTCCAGTTGTTGTTGCATTATCACTTAACTATCGTGAAAATGGGTGCACTGTTGGGTTATCATTTGTTGATTTAACTAAGAGAGTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACGAATGTGGAGTCGGCATTAGTTGCTCTTGGCTGCAAAGAATGCCTTCTTCCTAGTGAGAGTGGCAAATCTACTGAAAATAGAATGCTGTGCGATGCGTTGACTAAATGTGGTGTGATGTTAACTGAGAGAAAGAAATCCGAGTTTAAAACCAGGGATCTGGTACAGGATCTTGGCAGACTTGTTAAAGGTTCTATTGAACCAGTTCGAGACTTAGTGTCTGGATTTGAGTTTGCACCTGGGGCTTTAGGGGCATTACTATCATATGCTGAGTTACTTGCAGATGAGAGCAATTACGGGAATTTTACTCTTCGTAGGTACAGTCTTGACAGTTATATGAGATTAGATTCTGCAGCCATGAGGGCACTCAATGTTCTTGAAAGCAAAACCGATGCAAACAAAAATTTTAGTTTGTTCGGTCTAATGAATAGGACCTGTACAGCCGGAATGGGGAAACGGTTATTGCACATGTGGCTAAAACAGCCCTTGTTGAATGTTAATGAAATTAACTTGAGACTTGATGTTGTACAAGCATTTGTAGAGGATACTGTACTTCGGCAAGATCTGAGGCAGCATTTAAGAAGAATATCAGACATTGAGCGGTTGGTACACAATCTTCAGAAGCGGAGAGCTGGTCTTGCACATATTGTTAAACTTTATCAGTCAAGTATAAGACTACCTTATATCAAAAGCGCCCTAGAAAGATATGATGGACCATTTTCCTCAATGATGAAGAGCAGGTACTTGGAACCTCTTGAGTTGTGGACAGATGATGATCACCTAAATAAATTCATTGGCCTTGTAGAAGCTTCTGTTGACCTTGATCAACTGGAGAACAGAGAATACATGATTTCCTCAAGTTATGACCCTACACTAACTAAATTGAAGGAGCAGCAGGAGTCATTAGAGAATCAAATACATAAATTGCATAGACAAACTGCTGATGATCTTGATCTTCCTGTAGACAAGGCATTAAAGTTAGACAAGGGGACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCCAAAATAAGGAAGAAGCTTAACTCCCAGTTCGTTGTACTGGAAACACGTAAAGATGGAGTGAAATTTACCAACACAAAGCTAAGGAAACTTGGGGACCAGTATCAACAGGTACTTGAGGAGTACAAGAGCTGTCAGAAAGAGTTGGTTAATAGAGTAGTTCAAACTGCTGCAACATTCTCAGAGGTGTTTGAATCTTTAGCCGAATTGATTTCTGAACTGGATGTGTTATTAAGCTTTGCTGATTTGGCTTCCAGCTGCCCGACACCTTATACAAGGCCTGAAATCACTTCATCGGATGAAGGAGATATTATTTTAGAAGGCAGCAGACACCCTTGTGTAGAGGCACAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTATCAGAGAAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCAACATTCATCCGCCAGGTGGGAGTGAACATTTTGATGGCCCAAGTTGGCTGCTTTGTTCCTTGTGATAATGCCAGCATATCTGTTCGTGATTGCATTTTTGCCCGTGTTGGTGCTGGTGACTGTCAACTTCGAGGAGTTTCTACCTTCATGCAAGAAATGCTTGAGACTGCATCAATATTAAAAGGAGCTACAGTCAAGTCCTTGATAATCATTGATGAATTGGGACGTGGGACATCAACTTATGATGGATTTGGTCTTGCTTGGGCCATTTGTGAGCACATTGTTGAAGTAATCAAAGCACCTACTTTGTTTGCAACCCACTTTCATGAACTGACTGCATTATCCCTTGAAAATGCAAGTGATGATCAGCAGAAGCGAATTGTTGGTGTTGCAAACTATCATGTTAGCGCGCATATTGATGCTTCAACTCGCAAGCTAACTATGCTATACAAGGTTGAACCAGGAGCTTGTGACCAAAGTTTTGGTATTCATGTTGCCGAGTTTGCAAATTTTCCAGAAAGTGTTGTAGCCCTAGCCAGAGAAAAGGCAGCAGAGTTGGAAGATTTTTCTCCCTCTGCACTATCCTTAACTGACACCACAAATGAGTTTGGTTCTAAGCGCAAGAGAGTATATGAACCCGATGAAATGTCGCAAGGCGTTACAAAGGCTCGCCAAATCCTTGAAGCGTTTGTTGATTTGCCTTTAGAAACCATGGATAAAATGCAAGCTTTGCAGGAACTAAGGAAGTTAAAAGATAATTTAGAGAAGGATGCTGAAAACTGTCGATGGCTGCAACAATTCTTGTAG 2832 0.4135 MVEAFDDNSNNKLPELKLDTKQAQGFLSFFKTLPNDSRAIRFFDRRDYYTAHGENATFIAKTYYHTTTVLRQLGSGSDPLSSVSVSRTMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNYRENGCTVGLSFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLLPSESGKSTENRMLCDALTKCGVMLTERKKSEFKTRDLVQDLGRLVKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNFTLRRYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLNVNEINLRLDVVQAFVEDTVLRQDLRQHLRRISDIERLVHNLQKRRAGLAHIVKLYQSSIRLPYIKSALERYDGPFSSMMKSRYLEPLELWTDDDHLNKFIGLVEASVDLDQLENREYMISSSYDPTLTKLKEQQESLENQIHKLHRQTADDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLNSQFVVLETRKDGVKFTNTKLRKLGDQYQQVLEEYKSCQKELVNRVVQTAATFSEVFESLAELISELDVLLSFADLASSCPTPYTRPEITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDNASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATVKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALSLENASDDQQKRIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSALSLTDTTNEFGSKRKRVYEPDEMSQGVTKARQILEAFVDLPLETMDKMQALQELRKLKDNLEKDAENCRWLQQFL 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g03111 943 Gene3D - 524 618 - -
Adu01g03111 943 Gene3D - 296 523 - -
Adu01g03111 943 Pfam MutS domain V 664 862 IPR000432 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 25 927 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Adu01g03111 943 CDD ABC_MSH2_euk 632 862 - -
Adu01g03111 943 SUPERFAMILY DNA repair protein MutS, domain II 157 311 IPR036678 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Pfam MutS domain III 302 608 IPR007696 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 SMART DNAend 316 644 IPR007696 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 ProSitePatterns DNA mismatch repair proteins mutS family signature. 742 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 SMART mutATP5 661 859 IPR000432 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Pfam MutS family domain IV 471 568 IPR007861 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 SUPERFAMILY DNA repair protein MutS, domain III 299 613 IPR036187 -
Adu01g03111 943 Pfam MutS domain II 145 285 IPR007860 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Pfam MutS domain I 25 130 IPR007695 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Gene3D - 619 940 IPR027417 -
Adu01g03111 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 863 IPR027417 -
Adu01g03111 943 PIRSF MSH2 8 943 IPR011184 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Coils Coil 912 939 - -
Adu01g03111 943 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 25 927 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Adu01g03111 943 Gene3D DNA repair protein MutS, domain I 9 123 IPR016151 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Gene3D MutS, connector domain 124 293 IPR036678 GO:0005524|GO:0006298|GO:0030983
Adu01g03111 943 Coils Coil 555 575 - -
Adu01g03111 943 Coils Coil 372 392 - -
Adu01g03111 943 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g03111 Adu-Chr1 102647896 102653799 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g03111 K08735 - gmx:100792272 1695.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g03111 01 102647896 102653799 Adu01g03111 01 102647896 102653799 ECH