Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02562 ATGAACGCTTTTCCTTCCCCATCATCTTCATCTTCTTCTAACTTCAATCTCTTTACTCAGCCCAAGCACAACAACTACTACCACTTCAAGTTCAGCCTCAAAATTCCAGTTTTGCCCTCTCCGCCATATTGCTCTTTCAGAGACTCTTCCTCATCCGCCACTACTGTCCTGGACAAAAATGCCATTTCCTCCCAACAGAGTCCCAGTTCCAATGTAGTTTTGCCGAAAGACGCCAACTATGAGGGAGGGCTCGTCGTTCGCCGGCCGGTGATGGAGGTTCCCGGCGATGAGGAGGAGGACGGAGGGAAGGACGCGACCGATGACGATGAAGCGAATGGTTCTGCTTCTGCGATCGATGCCGGACTCACGAAGTTCGCGAAGAAGATGCCCATGTTTGAGCCCGAAAGGGTGGAATCGAATCCCAAAGAGAAGCCGCTAACTGTGAACTTGGACTTGGCACTGTACAGGGCCAAGGTCTTGGCTAGAAAATTTCTCTATGAAGAAGCAGAAGCTATACTTCAGAAGTGTATATACTGTTGGCCGGAAGATGGTCGAGCTTATGTGGCACTTGGGAAAATTTTGAGCAAGCAATCAAAGACAAGTAAAGCGAGAGAGGTGTACGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATGCTTACATTTGGCAGTGTTGGGCTGTTCTAGAAAATAAAATGGGAAATATGAGGAGGGCAAGAGAGTTATTCGACGCTGCCACGGTTGCTGATAAGAAGCATGTTGCTGCTTGGCACGGATGGGCAGTTCTAGAGTTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTTTGTTAGTGAAAGGTCTTAAGTATTGTGGACAGAATGAATATATTTACCAAACACTGGCATTGCTTGAAGTTAGAGCAAATCGGTATCAGCAAGCTCGATATTTATTCAGTCAGGCCACGAAATCTAATCCTAACAGCTGCGCTAGTTGGCTTGCTTGGGCACAAATGGAGGTGGAACAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCATCTTTGAATCTAAAATGGGCAACATTGACAAGGGAAGAAAACTTCTAAAGATAGGCCATGCTCTAAATCCGAGGGATCCTGTTCTCCTTCAGTCTCTTGCATTGTTAGAATACAAGCACTCAACGGCAAACCTTGCTCGGGTCTTGTTCAGGAGAGCATCTGAATTGGATCCAAGGCATCAACCTGTTTGGTTTGCCTGGGGTTGGATGGAGTGGAAGGAAGGAAACTTGAATAAAGCTAGAGAGTTATATCAAAAGTCCTTATCAATTGATTCAAACAGTGAGAGTGCTGCTAGGTGTCTTCAGGCGTGGGGTGTTCTAGAACAGAGGGCTGGTAATCTTTCAGCTGCCCGAAGATTATTTAGATCATCATTGAACATAAACTCTCAGAGTTATGTGACATGGATGACTTGGGCATCACTGGAGGAAGATCAAGGAAATTCTGTTCGTGCTGAAGAGATTCGTAACCTGTATTTCCAGCAGCGCACGGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCTTAGATATTATAGACCCAGCCGTTGACCGTCTGAAGAGACTCCTTAAGCTGGACCCGAATTCTTCCAACATGATGCCGGATTCTTTCAAAAGTATCGCCGGAATAAATAAAAACAAGGTTGATTTAGCCGGCACAAGTTCTAATGTCGATGATGGTGAAGAAGCTGAAAGTGGTTTTGATTTGGATGCTTTCATTATGGAAAGGTTGTCCTTAGATACATCCAAGCTGGAAGTTCAGTTAGAACCATCAACTGTGAAGACAAGTAAATCTCCAAGGAGGATGTGGAGATCAAACAATAGAATTGTCAAAGTGTAA 1926 0.4496 MNAFPSPSSSSSSNFNLFTQPKHNNYYHFKFSLKIPVLPSPPYCSFRDSSSSATTVLDKNAISSQQSPSSNVVLPKDANYEGGLVVRRPVMEVPGDEEEDGGKDATDDDEANGSASAIDAGLTKFAKKMPMFEPERVESNPKEKPLTVNLDLALYRAKVLARKFLYEEAEAILQKCIYCWPEDGRAYVALGKILSKQSKTSKAREVYEKGCQATQGENAYIWQCWAVLENKMGNMRRARELFDAATVADKKHVAAWHGWAVLELKQGNIKKARSLLVKGLKYCGQNEYIYQTLALLEVRANRYQQARYLFSQATKSNPNSCASWLAWAQMEVEQENYRAARKLFEKAVQASPKNRFAWHVWGIFESKMGNIDKGRKLLKIGHALNPRDPVLLQSLALLEYKHSTANLARVLFRRASELDPRHQPVWFAWGWMEWKEGNLNKARELYQKSLSIDSNSESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDIIDPAVDRLKRLLKLDPNSSNMMPDSFKSIAGINKNKVDLAGTSSNVDDGEEAESGFDLDAFIMERLSLDTSKLEVQLEPSTVKTSKSPRRMWRSNNRIVKV 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02562 641 Pfam Tetratricopeptide repeat 232 278 - -
Adu01g02562 641 Pfam Tetratricopeptide repeat 293 354 - -
Adu01g02562 641 SMART tpr_5 184 217 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 423 456 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 253 286 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 219 252 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 355 388 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 460 493 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 287 320 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 321 354 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 150 183 IPR019734 GO:0005515
Adu01g02562 641 SMART tpr_5 389 422 IPR019734 GO:0005515
Adu01g02562 641 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 49 635 IPR044624 GO:0003729|GO:0006397
Adu01g02562 641 Gene3D Tetratricopeptide repeat domain 218 562 IPR011990 GO:0005515
Adu01g02562 641 SUPERFAMILY TPR-like 357 561 IPR011990 GO:0005515
Adu01g02562 641 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Adu01g02562 641 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Adu01g02562 641 ProSiteProfiles TPR repeat profile. 423 456 IPR019734 GO:0005515
Adu01g02562 641 Gene3D Tetratricopeptide repeat domain 148 217 IPR011990 GO:0005515
Adu01g02562 641 SMART hat_new_1 403 435 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 335 367 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 233 265 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 267 299 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 198 231 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 474 506 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 301 333 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 369 401 IPR003107 GO:0006396
Adu01g02562 641 SMART hat_new_1 437 472 IPR003107 GO:0006396
Adu01g02562 641 SUPERFAMILY TPR-like 169 399 IPR011990 GO:0005515
Adu01g02562 641 Pfam Tetratricopeptide repeat 425 455 IPR019734 GO:0005515
Adu01g02562 641 Pfam Tetratricopeptide repeat 185 211 IPR019734 GO:0005515
Adu01g02562 641 MobiDBLite consensus disorder prediction 90 114 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02562 - - gmx:100819232 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02562 01 94921649 94924897 Adu01g02562 01 94921649 94924897 ECH